Schork-Lab/mediator-was

Issues

• Crohn's Disease

  #35 opened 8 years ago
  13

• Simulation on controls only

  #34 opened a year ago
  0

• Bayesian Modeling

  #33 opened 8 years ago
  0

• Two sample two stage linear regression

  #30 opened 9 years ago
  1

• Compare NTR, MET, YFS, and Predixcan

  #29 opened 9 years ago
  0

• Basic Simulation

  #28 opened 9 years ago
  1

• Power of estimators

  #27 opened 8 years ago
  0

• Implement heteroscedastic estimators

  #26 opened 9 years ago
  2

• Fix homoscedastic estimators

  #25 opened 9 years ago
  0

• Plan

  #24 opened a year ago
  0

• Fix simulation

  #23 opened 9 years ago
  0

• Predict in WTCCC

  #22 opened a year ago
  0

• Fix error model

  #21 opened 8 years ago
  0

• Brainstorming Questions

  #20 opened 9 years ago
  1

• Tissue-specific variation

  #19 opened 8 years ago
  1

• Look at genomic differences between different expression datasets

  #18 opened 8 years ago
  3

• Questions about Gusev et al's TWAS

  #17 opened 9 years ago
  6

• Run BSLMM with GTex samples

  #16 opened 9 years ago
  0

• Controlling type I error

  #15 opened 9 years ago
  2

• Fix naive analysis

  #14 opened 9 years ago
  4

• Parse BSLMM output from Gusev et al.

  #13 opened 9 years ago
  2

• Stream predict expression with multiple genotype filetypes, and different representations of weights

  #12 opened 9 years ago
  0

• Regression calibration estimate, likelihood ratio test

  #11 opened 9 years ago
  1

• Modify GEMMA to output SEs of Betas or just calculate expression at each iteration

  #10 opened 9 years ago
  2

• Weighted least squares for effect size of modulation of phenotype using regression

  #9 opened 9 years ago
  2

• Predict expression and uncertainty using BSLMM

  #8 opened 9 years ago
  1

• Rerun ElasticNet using GTEX

  #7 opened 8 years ago
  1

• Structure code to be more of a python package

  #6 opened 9 years ago
  1

• Compare GTEX-measured to GTEX-predixcan

  #5 opened 9 years ago
  1

• Write down complete mathematical model

  #4 opened 9 years ago
  1

• How do different normalization steps affect the reliability ratio?

  #3 opened 9 years ago
  2

• How to best separate the GTEX samples for training and testing?

  #2 opened 9 years ago
  1

• Unit test for prediction code

  #1 opened 9 years ago
  0