SciLifeLab/TIDDIT

Issues

• Update Dockerfile

  #101 opened a month ago by Jessime
  4

• Duplicate VCF lines from HG002 BAM

  #111 opened a month ago by themkdemiiir
  2

• Publish TIDDIT 3.8.0 to Bioconda

  #119 opened 4 months ago by ivadym
  0

• Larger CNVs being called

  #117 opened 5 months ago by pauline-ng
  5

• Unexpected VCF line

  #115 opened 7 months ago by MKaandemir
  5

• SVTYPE=BND on the same chromosome

  #114 opened 8 months ago by Knnnk
  2

• tiddit_variant error

  #106 opened 2 years ago by islekburak
  5

• BWA index error

  #113 opened 9 months ago by sreerampeela
  1

• Parameters for exome seq data

  #112 opened 9 months ago by MatLienhard
  2

• TiDDIT seems to be more sensitive in the version of index files

  #110 opened a year ago by chlu0571
  1

• `ValueError`: file does not contain alignment data

  #109 opened a year ago by bounlu
  2

• Assertion failed, Abort trap: 6

  #107 opened a year ago by islekburak
  8

• Error when using alt-contigs for Tiddit-sv

  #103 opened 2 years ago by SarahBeecroft
  3

• get_gc creates format restriction for reference fasta

  #99 opened 2 years ago by lightning-auriga
  2

• QUAL missing

  #96 opened 2 years ago by fgvieira
  5

• VCF output: mismatch between header and FORMAT fields

  #97 opened 2 years ago by VladimirRoudko
  5

• FORMAT/LQ value always the same

  #93 opened 2 years ago by fgvieira
  2

• tiddit --cov missing -u option

  #94 opened 2 years ago by jemten
  1

• FORMAT/RD missing from header

  #91 opened 2 years ago by fgvieira
  2

• bwa index error

  #89 opened 2 years ago by cmatKhan
  2

• Dependency is Python 3.8 or higher, doesn't work with any python3 version

  #87 opened 3 years ago by SzilviaKiriakov
  1

• Inverted DUP

  #39 opened 3 years ago by dnil
  5

• Update bioconda?

  #82 opened 3 years ago by FriederikeHanssen
  14

• [solution] Build failure with gcc-11

  #80 opened 3 years ago by nileshpatra
  1

• New Command Line Options?

  #78 opened 4 years ago by iamh2o
  2

• Document coverage features..

  #72 opened 5 years ago by dnil
  2

• VCF header

  #70 opened 5 years ago by aakrosh
  1

• Stuck after Constructed GC wig

  #68 opened 5 years ago by asylvz
  9

• Error when using CRAM file as input

  #64 opened 5 years ago by fgvieira
  1

• ERROR AFTER INSTALLING sys.path.insert(0,'{}/src/'.format(wd))

  #60 opened 6 years ago by bibbers93
  4

• Small homozygous deletion (call het)

  #57 opened 6 years ago by jessada
  1

• memory and cpu

  #55 opened 6 years ago by lz100
  4

• wrong outputs?

  #49 opened 6 years ago by arkyl
  10

• reference not required

  #52 opened 6 years ago by hurleyLi
  2

• IndexError: index 13 is out of bounds for axis 0 with size 13

  #50 opened 6 years ago by YiweiNiu
  3

• error: reference mismatch!

  #46 opened 7 years ago by ldosouto
  6

• reference mismatch error

  #43 opened 7 years ago by DavidEGray
  5

• Some questions

  #40 opened 7 years ago by svedziok
  1

• Missing SVLEN

  #37 opened 7 years ago by moonso
  1

• How genotype are assigned ?

  #35 opened 7 years ago by npatel22526
  1