iamh2o

bloom

Templated Abstract Polymorphic (and opinionated) LIMS

daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

fedex_tracking_day

Python Module Interfacing w/The FedEx Tracking API

zebra_day

Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.

AnyBar

OS X menubar status indicator

Arioc

Arioc: GPU-accelerated DNA short-read alignment

gravity_well

A tool to import text, markdown, and PDF files into Obsidian as new notes, add NLP derived tags, and track other properties.

mirrormirror

Three dead person switches to lock MAC hardware if (face regognition fails, bluetooth device connection lost, location change) conditions are met.

pyramidtriangles

S/W to run the pyramid scheme triangles (drawn from the grgbrn baaahs2014 codebase)

rgbw_colorspace_converter

RGB to RGBW Translation / Conversion, as well as operating with HSV / HSI / HSL / HEX color spaces. With a focus towards LED based projects, but is a helpful color module as well. And a growing vein of generative ansi art!

iamh2o/rgbw_colorspace_converter

RGB to RGBW Translation / Conversion, as well as operating with HSV / HSI / HSL / HEX color spaces. With a focus towards LED based projects, but is a helpful color module as well. And a growing vein of generative ansi art!

iamh2o/gravity_well

A tool to import text, markdown, and PDF files into Obsidian as new notes, add NLP derived tags, and track other properties.

iamh2o/pyramidtriangles

S/W to run the pyramid scheme triangles (drawn from the grgbrn baaahs2014 codebase)

iamh2o/askcos2_core

Mirror of askcos2-core for Chemhacktica

iamh2o/mirrormirror

Three dead person switches to lock MAC hardware if (face regognition fails, bluetooth device connection lost, location change) conditions are met.

iamh2o/1click-hpc

Deploy your HPC Cluster on AWS in 20min. with just 1-Click.

iamh2o/analysis-wdls

Scalable genomic analysis pipelines, written in WDL

iamh2o/aws-parallelcluster

AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

iamh2o/bashsimplecurses

A simple curses library made in bash to draw terminal interfaces

iamh2o/btw

btw east bay getaway

iamh2o/btw_schemes

iamh2o/bwa-mem-scale

iamh2o/cherrypy_examples

cherrypy recipes : google oauth2

iamh2o/cronicle-edge

Cronicle V2 (Orchestra) community prototype

iamh2o/Cyrius

A tool to genotype CYP2D6 with WGS data

iamh2o/Hola-template-HTML

iamh2o/microlab-parts

CAD and STL files for 3D printed parts of the MicroLab

iamh2o/MultiQC

(attempting to improve file search speedsAggregate results from bioinformatics analyses across many samples into a single report.

iamh2o/obsidian-releases

Community plugins list, theme list, and releases of Obsidian.

iamh2o/open-humans

Powering openhumans.org

iamh2o/pdf-parse

Fork of https://gitlab.com/autokent/pdf-parse (FIXED test/data/05-versions-space.pdf bug)

iamh2o/pdf_tables_to_tsv

Crude tool to attempt extraction of table data from pdfs (use with caution, not extensively tested)

iamh2o/rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

iamh2o/searx-space

Statistics of the public SearX(NG) instances

iamh2o/SMNCopyNumberCaller

A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS

iamh2o/solderless-microlab

iamh2o/strobealign

Aligns short reads using dynamic seed size with strobemers

iamh2o/supportxmr-gui

Lightweight and fast UI for nodejs-pool based project, initially designed for supportxmr.com

iamh2o/sv-channels

Deep learning-based structural variant caller

iamh2o/vscode-wakatime

Visual Studio Code plugin for automatic time tracking and metrics generated from your programming activity.