iamh2o
curious Bioinformatics human Consulting: https://daylilyinformatics.com DJ+Artist: https://soundcloud.com/majorjohn
Daylily InformaticsOakland, CA
Pinned Repositories
bloom
Templated Abstract Polymorphic (and opinionated) LIMS
daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
fedex_tracking_day
Python Module Interfacing w/The FedEx Tracking API
zebra_day
Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
AnyBar
OS X menubar status indicator
Arioc
Arioc: GPU-accelerated DNA short-read alignment
gravity_well
A tool to import text, markdown, and PDF files into Obsidian as new notes, add NLP derived tags, and track other properties.
mirrormirror
Three dead person switches to lock MAC hardware if (face regognition fails, bluetooth device connection lost, location change) conditions are met.
pyramidtriangles
S/W to run the pyramid scheme triangles (drawn from the grgbrn baaahs2014 codebase)
rgbw_colorspace_converter
RGB to RGBW Translation / Conversion, as well as operating with HSV / HSI / HSL / HEX color spaces. With a focus towards LED based projects, but is a helpful color module as well. And a growing vein of generative ansi art!
iamh2o's Repositories
iamh2o/CloudNeo
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
iamh2o/colr
Easy terminal colors, with chainable methods.
iamh2o/flowcelltool
Simple management of Illumina sequencing flowcells
iamh2o/alignstats
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
iamh2o/atom-git-project-manager
Atom package that identifes all your git projects and provide quick project opening.
iamh2o/BamQC
Mapped QC analysis program
iamh2o/bashids
Pure Bash implementation of the hashid algorithm from http://hashids.org/
iamh2o/ccat
Colorized cat command in Python. Uses Pygments to do automatic syntax highlighting.
iamh2o/cubi_demux
Demultiplexing utility, companion to flowcelltool.
iamh2o/cyber_yeah
A cyber punk atom theme for modern coders like you
iamh2o/docker-wdt
Docker image for Warp speed Data Transfer (WDT)
iamh2o/fzcat
Fast zcat with mmap and miniz
iamh2o/grabseqs
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
iamh2o/iPlant-BWA-MEM-Parallel
A wrapper for increasing scaling of BWA.
iamh2o/NotLinuxAjazzAK33RGB
Not a Linux utility for the AJAZZ AK33 RGB keyboard
iamh2o/ONT
A repository of scripts associated with running / analysing of the Oxford Nanopore MinION
iamh2o/ontology_alignment
Experiments aligning HPO and SNOMED medical ontologies
iamh2o/printserver
A simple rest for receiving an encrypted POST, and responsible for printing a label on the Zebra printer in linux environment
iamh2o/py-upset
A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.
iamh2o/reqscan
Python program for digitization of barcoded records using an ADF scanner
iamh2o/rhttpserve
A tiny HTTP server that can serve files out of any rclone remote.
iamh2o/Simple-ClinVar
Shiny ClinVar web server source code
iamh2o/singularity-examples
example singularity definition files and demos
iamh2o/snpedia-23andme
Analyse a genome file from 23andMe using the data on snpedia.com
iamh2o/unicall
A wrapper for calling small variants from human germline high-coverage single-sample Illumina data