iamh2o
curious Bioinformatics human Consulting: https://daylilyinformatics.com DJ+Artist: https://soundcloud.com/majorjohn
Daylily InformaticsOakland, CA
Pinned Repositories
bloom
Templated Abstract Polymorphic (and opinionated) LIMS
daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
fedex_tracking_day
Python Module Interfacing w/The FedEx Tracking API
zebra_day
Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
a_view_of_addiction
Thoughts, data and analysis re: my health challenges and successes in treating addiction.
AnyBar
OS X menubar status indicator
gravity_well
A tool to import text, markdown, and PDF files into Obsidian as new notes, add NLP derived tags, and track other properties.
mirrormirror
Three dead person switches to lock MAC hardware if (face regognition fails, bluetooth device connection lost, location change) conditions are met.
pyramidtriangles
S/W to run the pyramid scheme triangles (drawn from the grgbrn baaahs2014 codebase)
rgbw_colorspace_converter
RGB to RGBW Translation / Conversion, as well as operating with HSV / HSI / HSL / HEX color spaces. With a focus towards LED based projects, but is a helpful color module as well. And a growing vein of generative ansi art!
iamh2o's Repositories
iamh2o/mm2-fast
Accelerated version of minimap2; up to 1.8x faster
iamh2o/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
iamh2o/aws-parallelcluster-cost-allocation-tags
iamh2o/biograph
The BioGraph genomics analysis platform
iamh2o/black
The uncompromising Python code formatter
iamh2o/dysgu
dysgu-SV is a collection of tools for calling structural variants using short or long reads
iamh2o/fd
A simple, fast and user-friendly alternative to 'find'
iamh2o/GenomeTester4
A toolkit for performing set operations - union, intersection and complement - on k-mer lists.
iamh2o/genomewarp
GenomeWarp translates genetic variants from one genome assembly version to another.
iamh2o/glances
Glances an Eye on your system. A top/htop alternative for GNU/Linux, BSD, Mac OS and Windows operating systems.
iamh2o/hsluv
Human-friendly HSL, reference implementation
iamh2o/hyperfine
A command-line benchmarking tool
iamh2o/lights
BAAAHS Lighting
iamh2o/LS_COLORS
A collection of LS_COLORS definitions; needs your contribution!
iamh2o/mimalloc
mimalloc is a compact general purpose allocator with excellent performance.
iamh2o/MONSDA
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
iamh2o/nf-bam2fastq
Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.
iamh2o/obs-websocket
Remote-control of OBS Studio through WebSocket
iamh2o/octopus_octant
A scalable cloning system
iamh2o/oxfs
✨A dead simple, fast SFTP file system ✨
iamh2o/PyOxidizer
A modern Python application packaging and distribution tool
iamh2o/PyVCF3
A Variant Call Format reader for Python.
iamh2o/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
iamh2o/snakemake-aws-parallelcluster-slurm
Snakemake profile for running on AWS ParallelCluster with the Slurm scheduler
iamh2o/srf
SRF: Satellite Repeat Finder
iamh2o/SuperMalloc
kuszmaul/SuperMalloc port to Windows
iamh2o/varfish-cli
VarFish REST API client (CLI + Python package)
iamh2o/varfish-docker-compose
Setup VarFish as using Docker Compose
iamh2o/warp-cli
A CLI tool designed to make interacting with Facebook's Open Source Library "Warp Speed Data Transfer" fast and pain-free.
iamh2o/zebra-zpl
Gem for using Ruby to print Zebra labels