Serka-M

Bioinformatician working with applications of long-read sequencing in microbial ecology

Aalborg University

Pinned Repositories

bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Language:Python0 0 00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0 00
Cable-Bacteria-MAGs
Repository for scripts and resources used for recovery of Cable Bacteria MAGs from sequenced samples
0 1 00
Digester-MultiSequencing
Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
Language:Python21 1 01
ENAdumper
Workflow for high-throughput upload of sequencing data to the European Nucleotide Archive
Language:Shell0 1 00
longread_umi
Updated version of the longread_umi pipeline
Language:Shell2 0 02
mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Language:Python38 1 44
mmlong2-lite
Lightweight bioinformatics pipeline for microbial genome recovery
Language:Python8 2 03
nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
Language:Rust0 0 00
optimal-ph
Repository for the Copenhagen Biohackathon 2021 challenge of Predicting Optimal pH for Enzyme Activity. Team N-SVAMT.
Language:Python0 0 00

Serka-M/mmlong2
Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes
Language:Python38 1 44
Serka-M/Digester-MultiSequencing
Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
Language:Python21 1 01
Serka-M/mmlong2-lite
Lightweight bioinformatics pipeline for microbial genome recovery
Language:Python8 2 03
Serka-M/longread_umi
Updated version of the longread_umi pipeline
Language:Shell2 0 02
Serka-M/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0 00
Serka-M/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Language:Python0 0 00
Serka-M/Cable-Bacteria-MAGs
Repository for scripts and resources used for recovery of Cable Bacteria MAGs from sequenced samples
0 1 00
Serka-M/ENAdumper
Workflow for high-throughput upload of sequencing data to the European Nucleotide Archive
Language:Shell0 1 00
Serka-M/nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
Language:Rust0 0 00
Serka-M/optimal-ph
Repository for the Copenhagen Biohackathon 2021 challenge of Predicting Optimal pH for Enzyme Activity. Team N-SVAMT.
Language:Python0 0 00
Serka-M/SemiBin
Language:Python0 0
Serka-M/Serka-M
Config files for my GitHub profile.
1 0