- Ph.D. candidate in Dr. David Koslicki's lab, Penn State University
- Domain: Bioinformatics, Metagenomics, Genomics data science
- Email: spliu@psu.edu
- Resume
- Metagenomic analysis and method development
- Knowledge graph and graph learning
- Knowledge graph and graph-based genomic data science:
- MetagenomicKG: construction of a metagenomic-specific knowledge graph and how it can be used for metagenomic data mining.
- ARAX: a knowledge-graph-based computational reasoning tool for translational biomedicine.
- Metagenomic analysis and algorithm development:
- CMash: a modified containment MinHash algorithm for multi-resolution k-mer-based similarity estimation.
- FracMinHash vs Syncmer: bridging the FracMinHash algorithm with syncmers for metagenomic analysis.
- FracMinHash for functional profiling: utilization of the FracMinHash algorithm for metagenomic functional profiles.
- Genomic data analysis
- AIAP: an integrative pipeline for comprehensive analysis of ATAC-seq dataset implemented in Docker and Singularity.
