Shunsuke-1994

Shunsuke-1994's Stars

• microsoft/generative-ai-for-beginners

  21 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

  Language:Jupyter Notebook66.3k57413334.3k

• microsoft/LoRA

  Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

  Language:Python11.1k70108698

• clementchadebec/benchmark_VAE

  Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

  Language:Python1.9k1869169

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 from Google Deepmind in Pytorch

  Language:Python1.3k4756158

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook1.2k2361151

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python67613132121

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python6131113970

• google-deepmind/alphamissense

  Language:Python53225069

• ewenme/ghibli

  Studio Ghibli colour palettes

  Language:R4237318

• tomomano/learn-aws-by-coding

  コードで学ぶAWS入門

  Language:Jupyter Notebook40362441

• ponnhide/patchworklib

  Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

  Language:Jupyter Notebook39074725

• luancarvalhomartins/PyAutoFEP

  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

  Language:Python172613277

• chaitjo/geometric-rna-design

  gRNAde: Geometric Deep Learning for 3D RNA inverse design

  Language:Jupyter Notebook16411816

• althonos/pyhmmer

  Cython bindings and Python interface to HMMER3.

  Language:Cython13176812

• lbcb-sci/RiNALMo

  RiboNucleic Acid (RNA) Language Model

  Language:Python7841313

• eternagame/EternaFold

  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

  Language:C++5014410

• DasLab/draw_rna

  Draw RNA secondary structures in python.

  Language:Jupyter Notebook4510715

• marcellszi/rna3db

  A dataset for training and benchmarking deep learning models for RNA structure prediction

  Language:Python443107

• Doudna-lab/GARNET_DL

  Language:Python33300

• ml4bio/RiboDiffusion

  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

  Language:Python33415

• wehs7661/boltzmann_generators

  A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

  Language:Jupyter Notebook21343

• pfnet-research/GenerRNA

  Language:Python191426

• BGSU-RNA/fr3d-python

  Python implementation of the FR3D software for searching and annotating RNA 3D structures

  Language:Python17111610

• goodarzilab/SwitchFinder

  Language:Python14451

• shunsakuraba/fepsuite

  Software package for FEP

  Language:Python14443

• BackofenLab/RNAProt

  Modelling RBP binding preferences to predict RPB binding sites

  Language:Python12555

• Shujun-He/RibonanzaNet

  Language:Python11115

• hmdlab/REPrise

  REPrise is de novo interspersed repeat detection software.

  Language:C++5310

• pranav-bhamidipati/circuitree

  Gene circuit design using Monte Carlo tree search

  Language:Python2111

• wz-create/AptaDiff

  init commit

  Language:Python2101