Shunsuke-1994

Shunsuke-1994's Stars

• microsoft/generative-ai-for-beginners

  18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/

  Language:Jupyter Notebook62.2k53211831.8k

• microsoft/LoRA

  Code for loralib, an implementation of "LoRA: Low-Rank Adaptation of Large Language Models"

  Language:Python10.4k68105667

• clementchadebec/benchmark_VAE

  Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)

  Language:Python1.8k1865162

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook9311850112

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 in Pytorch

  Language:Python9294546107

• baker-laboratory/RoseTTAFold-All-Atom

  Language:Python61010120108

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python5771012760

• google-deepmind/alphamissense

  Language:Python49925065

• ewenme/ghibli

  Studio Ghibli colour palettes

  Language:R4187318

• tomomano/learn-aws-by-coding

  コードで学ぶAWS入門

  Language:Jupyter Notebook38662438

• ponnhide/patchworklib

  Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

  Language:Jupyter Notebook36974624

• luancarvalhomartins/PyAutoFEP

  PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

  Language:Python159612874

• chaitjo/geometric-rna-design

  gRNAde: Geometric Deep Learning for 3D RNA inverse design

  Language:Jupyter Notebook1459712

• althonos/pyhmmer

  Cython bindings and Python interface to HMMER3.

  Language:Cython12276412

• lbcb-sci/RiNALMo

  RiboNucleic Acid (RNA) Language Model

  Language:Python574129

• eternagame/EternaFold

  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

  Language:C++4814210

• marcellszi/rna3db

  A dataset for training and benchmarking deep learning models for RNA structure prediction

  Language:Python40364

• DasLab/draw_rna

  Draw RNA secondary structures in python.

  Language:Jupyter Notebook3810614

• ml4bio/RiboDiffusion

  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

  Language:Python26415

• Doudna-lab/GARNET_DL

  Language:Python25300

• wehs7661/boltzmann_generators

  A repository for the final project implementing/applying Boltzmann generators for Computational Statistical Physics (PHYS 7810) at CU Boulder

  Language:Jupyter Notebook19344

• BGSU-RNA/fr3d-python

  Python implementation of the FR3D software for searching and annotating RNA 3D structures

  Language:Python15111610

• goodarzilab/SwitchFinder

  Language:Python14451

• pfnet-research/GenerRNA

  Language:Python121424

• shunsakuraba/fepsuite

  Software package for FEP

  Language:Python12443

• BackofenLab/RNAProt

  Modelling RBP binding preferences to predict RPB binding sites

  Language:Python10544

• Shujun-He/RibonanzaNet

  Language:Python9104

• hmdlab/REPrise

  REPrise is de novo interspersed repeat detection software.

  Language:C++5310

• pranav-bhamidipati/circuitree

  Gene circuit design using Monte Carlo tree search

  Language:Python2111

• wz-create/AptaDiff

  init commit

  Language:Python2101