SilasK

Husband, Father & Metagenome researcher

Geneva

Pinned Repositories

atlas
ATLAS - Three commands to start analyzing your metagenome data
Language:Python378 15 43299
16S-dada2
Snakemake pipeline for amplicon sequencing using dada2
Language:Python9 2 67
Bubbleplot
Language:Jupyter Notebook1 2 00
FastDrep
Language:Python1 2 00
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Language:C++1 0 00
ipath3
Python wrapper for ipath3
Language:Jupyter Notebook10 3 11
Krak
Snakemake for flexitaxd and Kraken2
Language:Python6 4 33
stamps2019
Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
Language:HTML2 1 00
statsplot
Language:Jupyter Notebook4 1 00

SilasK's Repositories

SilasK/cruzdb
python access to UCSC genomes database
Language:Python2 0
SilasK/hmm
Hidden Markov Models in various languages
Language:Python2 0
SilasK/pymc-examples
PyMC Example Notebooks
SilasK/scipy2014_tutorial
Tutorial: Bayesian Statistical Analysis in Python
Language:Python2 0