Singh Lab

DeMaSk

Prediction of protein substitution impact using a directional substitution matrix and homolog alignments

Differential-Mutation-Analysis

Differential Mutation Analysis

dSPRINT

Per-position prediction of protein domains interaction-sites

InteracDome

Compute Site-Based Ligand-Binding Frequencies across the InteracDome

nCOP

Network-based coverage of mutational profiles

PertInInt

Rapidly uncover significantly somatically mutated protein functional regions

TandemDuplications

The-evolutionary-landscape-of-primate-protein-ligand-interfaces

treeSim

Simulates a Host and Guest Tree, and Sequences on top

uKIN

Using Knowledge In Networks

Singh-Lab/DeMaSk

Prediction of protein substitution impact using a directional substitution matrix and homolog alignments

Singh-Lab/Differential-Mutation-Analysis

Differential Mutation Analysis

Singh-Lab/PertInInt

Rapidly uncover significantly somatically mutated protein functional regions

Singh-Lab/dSPRINT

Per-position prediction of protein domains interaction-sites

Singh-Lab/InteracDome

Compute Site-Based Ligand-Binding Frequencies across the InteracDome

Singh-Lab/nCOP

Network-based coverage of mutational profiles

Singh-Lab/uKIN

Using Knowledge In Networks

Singh-Lab/TandemDuplications

Singh-Lab/Pou4_Misexpression

All relevant code and results used in "Novel Neuronal Identities Derived by Misexpression of the POU IV Sensory Determinant in a Proto-Vertebrate". Chacha et al., PNAS 2021.

Singh-Lab/The-evolutionary-landscape-of-primate-protein-ligand-interfaces

Singh-Lab/treeSim

Simulates a Host and Guest Tree, and Sequences on top

Singh-Lab/run-hmmer

Scripts to run both HMMER 2.3.2 and HMMER 3 on a set of Pfam HMMs, parse and combine results

Singh-Lab/diffASE

differential allele-specific expression

Singh-Lab/Dyscovr

Singh-Lab/kinaid

KINAID Dashboard and library code

Singh-Lab/optosos_supp_figures

Code to generate supplementary figures for optos paper