SithWijesinghe's Stars
erikgahner/awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
anuradhawick/kmertools
kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
marcotcr/lime
Lime: Explaining the predictions of any machine learning classifier
beiko-lab/sarand
To extract AMR genes and their neighborhood
katherinedougan/singularity_builds
Instructions and definitions files for building Singularity images to run bioinformatic tools on HPCs
kussell-lab/mcorr
Inferring bacterial recombination rates from large-scale sequencing datasets.
jordan-wei-taylor/genolearn
lmc297/BTyper3
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
AADavin/ALEtutorial
A tutorial on Phylogenetic Reconciliations using ALE
aaronmussig/PhyloDM
Efficient calculation of phylogenetic distance matrices.
cmdcolin/oddgenes
A small database of weird gene annotations
medvedevgroup/SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
rust-bio/rust-bio-tools
A set of command line utilities based on Rust-Bio.
shenwei356/csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
ctjhoa/rust-learning
A bunch of links to blog posts, articles, videos, etc for learning Rust
grst/rstudio-server-conda
Run Rstudio Server in a conda environment
fish-shell/fish-shell
The user-friendly command line shell.
pinbo/msa2snp
SNP and indel calls from multiple sequence alignment (MSA)
philarevalo/PopCOGenT
Microbial Populations as Clusters Of Gene Transfer
tldr-pages/tldr
📚 Collaborative cheatsheets for console commands
donovan-h-parks/biolib
Python package for common tasks in bioinformatic.
clap-rs/clap
A full featured, fast Command Line Argument Parser for Rust
bionitio-team/bionitio
Demonstrating best practices for bioinformatics command line tools
lmrodriguezr/nonpareil
Estimate metagenomic coverage and sequence diversity
spyder-ide/spyder
Official repository for Spyder - The Scientific Python Development Environment
bomeara/ComparativeMethodsInR
A book for teaching people how to do comparative methods in R
lczech/gappa
A toolkit for analyzing and visualizing phylogenetic (placement) data
great-houk/mouse-project
Contains all the relevant folders for the entire custom mouse project
jokergoo/ComplexHeatmap
Make Complex Heatmaps
Ecogenomics/ace-cluster-orchestrator
A template for distributing jobs across the ACE cluster.