Snakemake-Profiles/slurm

Getting "/bin/sh: slurm-status.py: command not found" error

Closed this issue · 3 comments

anilthanki commented

Hi

I followed the steps mentioned here and created profile. but I am getting "/bin/sh: slurm-status.py: command not found" error.

I am using Snakemake-6.8.0

Thanks

Anil

jdblischak commented

I am getting "/bin/sh: slurm-status.py: command not found" error.

Does your slurm-status.py file have executable permissions? Try making it executable with chmod +x slurm-status.py and re-run your Snakemake pipeline.

If the above doesn't work, please run ls -l on the directory that contains your profile and report its output. That will help us troubleshoot your issue.

percyfal commented

@anilthanki did the suggested solution work out for you?

anilthanki commented

Hi..

Sorry I have started using simple slurm from @jdblischak https://github.com/jdblischak/smk-simple-slurm

And its been working well I guess.

Thanks

Anil

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