Pinned Repositories
assemblyeval-smk
Snakemake workflow for evaluation of assemblies
genecovr
Gene body coverage in assemblies in R
manticore-smk
Snakemake workflow for non-model organism analyses
datasources-smk
Snakemake workflow to setup data sources
nbis-project-admin
NBIS project administration utilities
ratatosk
slurm
Cookiecutter for snakemake slurm profile
snakemake-rules
Library of snakemake rules.
snakemakelib
Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
slurm
Cookiecutter for snakemake slurm profile
percyfal's Repositories
percyfal/slurm
Cookiecutter for snakemake slurm profile
percyfal/pgip-exercises
Population Genomics in Practice - tutorials and exercises
percyfal/tswf
Whole genome tree sequence analyses
percyfal/cookiecutter-nbis-project
cookiecutter for NBIS projects
percyfal/nbis-project-admin
NBIS project administration utilities
percyfal/datasources-smk
Snakemake workflow to setup data sources
percyfal/bokeh
Interactive Data Visualization in the browser, from Python
percyfal/conda-recipes
Conda recipes for percyfal channel
percyfal/d4-format
The D4 Quantitative Data Format
percyfal/d4utils
Python utilities to work with d4 coverage files
percyfal/docker-centos7-slurm
Slurm Docker Container on CentOS 7
percyfal/GARG
Genealogies and Ancestral Recombination Graphs
percyfal/manticore-nf
percyfal/nbis-course-quarto
NBIS course quarto template
percyfal/percyfal.github.io
percyfal github io pages
percyfal/pgip-jlite
JupyterLite test for pgip
percyfal/pgip-r
percyfal/pgtk
Population genomics toolkit
percyfal/quarto-test
Test quarto actions
percyfal/relate
Software for estimating genome-wide genealogies for thousands of samples
percyfal/rust-bio-tools
A set of command line utilities based on Rust-Bio.
percyfal/sgkit
Statistical genetics toolkit
percyfal/simseqgen
Simulate sequences from genealogies and corresponding read sequences
percyfal/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
percyfal/snakemake-v7-github-action
A Github action for running a Snakemake workflow
percyfal/stdpopsim
A library of standard population genetic models
percyfal/Training-Tech-shorts
Short lessons, training various technologies useful to our work.
percyfal/tree-sitter-eidos
percyfal/tsinfer
Infer a tree sequence from genetic variation data.
percyfal/workshop-biodiversity-summit