D4Utils summarizes per-base coverages from multiple D4 files in parallel.
Sum per-base coverages over all files to generate a global coverage distribution for setting coverage-based accessibility mask thresholds.
Count files with coverages within a user-defined range for setting accessibility mask thresholds based on number of individuals with sufficient coverage.
- click
- pyd4
- tqdm
- pandas
You can install D4Utils via pip from the GitHub repository:
$ pip install git+https://github.com/percyfal/d4utils
Please see the Command-line Reference for details.
Contributions are very welcome. To learn more, see the Contributor Guide.
Distributed under the terms of the MIT license, D4Utils is free and open source software.
If you encounter any problems, please file an issue along with a detailed description.
This project was generated from @cjolowicz's Hypermodern Python Cookiecutter template.