Pinned Repositories
assemblyeval-smk
Snakemake workflow for evaluation of assemblies
genecovr
Gene body coverage in assemblies in R
manticore-smk
Snakemake workflow for non-model organism analyses
datasources-smk
Snakemake workflow to setup data sources
nbis-project-admin
NBIS project administration utilities
ratatosk
slurm
Cookiecutter for snakemake slurm profile
snakemake-rules
Library of snakemake rules.
snakemakelib
Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
slurm
Cookiecutter for snakemake slurm profile
percyfal's Repositories
percyfal/snakemakelib
Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
percyfal/ratatosk
percyfal/snakemake-rules
Library of snakemake rules.
percyfal/biomake
Makefile library for bioinformatics programs, with a focus on next-generation sequencing
percyfal/pytest-ngsfixtures
pytest fixtures for next generation sequencing applications
percyfal/cookiecutter-reproducible-ngs
A cookiecutter template for reproducible research, tailored for use with next-generation sequencing projects
percyfal/bokehutils
Utility functions and wrappers for generating ggplot-like plots with bokeh
percyfal/manticore
R utility functions for dealing with vcf data with a focus on analysis of non model organisms
percyfal/tskit
Analyse, create and manipulate tree sequences.
percyfal/assemblyeval-smk
Genome assembly evaluation workflow
percyfal/bioconda-recipes
Conda recipes for the bioconda channel.
percyfal/coalescent
Course work: simple R functions for doing coalescent simulations
percyfal/kmer-utils
kmer utility programs
percyfal/minimal-smk
Minimal snakemake workflow for testing purposes
percyfal/ngstk
NGS toolkit
percyfal/pytest-docker
Docker-based integration tests
percyfal/ripr
Calculate Repeat-induced point mutations in biological sequences
percyfal/rna-seq-map-smk
Snakemake workflow for RNA-seq mapping
percyfal/snakemake-workshop
percyfal/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
percyfal/texmf.local
Various tex additions