SpatialHackathon/SpaceHack2023

Issues

• Maple will not work in our benchmarking setting

  #320 opened 4 months ago by Jieran-S
  7

• Method MERINGUE

  #316 opened 4 months ago by peicai
  3

• data_split_abc_atlas_into_two

  #318 opened 6 months ago by meghanaturner
  2

• Native maple

  #279 opened 6 months ago by shdam
  0

• Native spatialGE

  #281 opened 6 months ago by shdam
  0

• Workflow: Scalable QC/preprocessing steps

  #297 opened 6 months ago by Jieran-S
  1

• data_merfish_devheart

  #270 opened 6 months ago by kbiharie
  0

• data_stereoseq_liver

  #274 opened 6 months ago by kbiharie
  0

• data_cosmx_liver

  #301 opened 6 months ago by kbiharie
  0

• data_cosmx_lung

  #302 opened 6 months ago by kbiharie
  0

• Visium HD colon cancer

  #305 opened 7 months ago by pakiessling
  0

• Native scMEB

  #278 opened 7 months ago by shdam
  0

• Methods: Regular neighboring function to technology adaptability

  #300 opened 7 months ago by Jieran-S
  0

• Native Giotto

  #280 opened 7 months ago by shdam
  0

• data_aging_mouse_brain_merfish

  #220 opened 8 months ago by pakiessling
  0

• data_visium_breast_cancer

  #251 opened 9 months ago by kbiharie
  0

• Method: spatialGE

  #246 opened 10 months ago by shdam
  0

• MERINGUE environment crash (igraph)

  #239 opened 10 months ago by Jieran-S
  5

• Seuart config 5

  #229 opened 10 months ago by Jieran-S
  4

• SpiceMix GPU

  #225 opened 10 months ago by Jieran-S
  2

• Method SCAN-IT

  #211 opened 10 months ago by Jieran-S
  2

• data_stereoseq_developing Drosophila embryos and larvae

  #163 opened 10 months ago by Qirongmao97
  1

• Bass & maple variable defintion issue

  #224 opened 10 months ago by Jieran-S
  0

• Path encoding for cross-method utility functions

  #234 opened 10 months ago by Jieran-S
  0

• data_stereoseq_mouse_embryo

  #162 opened 10 months ago by Qirongmao97
  1

• data_barseqv2_mousebrain

  #219 opened 10 months ago by pakiessling
  0

• Snakemake workflow

  #205 opened a year ago by Jieran-S
  0

• Method SOTIP

  #208 opened a year ago by Jieran-S
  0

• Optargs Spaceflow

  #209 opened a year ago by Jieran-S
  2

• Matched label returns `NaN` in metric calculation

  #215 opened a year ago by Jieran-S
  2

• SpiceMix annData

  #210 opened a year ago by Jieran-S
  1

• Method_Stardust

  #189 opened a year ago by shdam
  0

• Cluster parameter, neighbors defintion & other issues for method implementation

  #198 opened a year ago by Jieran-S
  1

• method_BASS

  #187 opened a year ago by shdam
  0

• method_BANKSY

  #172 opened a year ago by shdam
  0

• data_kidney_KPMP_VISIUM

  #101 opened a year ago by FADHLyemen
  6

• upload_Visium_DLPFC_data_to_BioImage_Archive

  #90 opened a year ago by naveedishaque
  3

• data_stereoseq_olfactory_bulb

  #165 opened a year ago by Qirongmao97
  0

• testing_giotto_with_Allen_Brain_datatset

  #159 opened a year ago by munizmom
  0

• Constructing spatial neighborhood with custom parameters

  #127 opened a year ago by Qirongmao97
  0

• data_mouse_spleen_codex

  #105 opened a year ago by pakiessling
  2

• SOTIP_licensing_issue_FOR_clustering_resolution_parameter

  #139 opened a year ago by theinvisibleliya
  2

• simulated_data_Giotto

  #145 opened a year ago by pfeiferl
  0

• data_spatialDLPFC

  #95 opened a year ago by niklasmueboe
  2

• Feature selection by Moran's I

  #124 opened a year ago by Qirongmao97
  0

• STARmap cortex/layering

  #123 opened a year ago by sebastiantiesmeyer
  0

• preprocessing_somDE_SVGs

  #130 opened a year ago by zsfrbkv
  0

• data_SOTIP_simulations

  #111 opened a year ago by naveedishaque
  0

• data_add_label_confidence_col_to_labelsTSV_template

  #96 opened a year ago by meghanaturner
  1

• method_Voyager

  #93 opened a year ago by geogav
  0