Pinned Repositories
asSeq
allele-specific sequencing data analysis pipeline
asSeq_pipelines
pipelines for using eQTL mapping using ASE
gtex_AnVIL
process GTEx data at AnVIL cloud space
ideas
Individual level Differential Expression Analysis for Single cells
PEPPRMINT
PEPPRMINT: PEPtide PResentation using a MIxture model and Neural neTwork
scRNAseq_pipelines
pipelines to process scRNA-seq data
ideas_pipeline
SMASH
Clustering somatic mutations to infer intra-tumor heterogeneity :smile:
ICeDT
Immune Cell Deconvolution in Tumor
CARseq_pipelines
real data analysis using CARseq
Sun Lab's Repositories
Sun-lab/STpath
Spatially resolved Transcriptomics and pathology imaging data
Sun-lab/DePTH
DePTH provides neural network models for sequence-based TCR and HLA association prediction
Sun-lab/PEPPRMINT
PEPPRMINT: PEPtide PResentation using a MIxture model and Neural neTwork
Sun-lab/asSeq
allele-specific sequencing data analysis pipeline
Sun-lab/DePTH_pipeline
Pipeline for DePTH draft
Sun-lab/SAME
Somatic mutation Association test with Measurement Errors
Sun-lab/basic
intra-tumor heterogeneity anlaysis using bulk and single cell sequencing data
Sun-lab/IT-predictor
genomic predictor of patient response to cancer immunotherapy
Sun-lab/ideas_pipeline
Sun-lab/ideas
Individual level Differential Expression Analysis for Single cells
Sun-lab/asSeq_pipelines
pipelines for using eQTL mapping using ASE
Sun-lab/SMASH
Clustering somatic mutations to infer intra-tumor heterogeneity :smile:
Sun-lab/ICeDT
Immune Cell Deconvolution in Tumor
Sun-lab/gtex_AnVIL
process GTEx data at AnVIL cloud space
Sun-lab/CARseq_pipelines
real data analysis using CARseq
Sun-lab/scRNAseq_pipelines
pipelines to process scRNA-seq data
Sun-lab/dMeth
deconvolution of gene expression using DNA methylation data
Sun-lab/CME
Copy number aberration, DNA Methylation, and gene Expression
Sun-lab/covid-19-rainier
Exploration of COVID-19 tracking data
Sun-lab/scZINB
scZINB
Sun-lab/act
Association analysis of Cell Type compositions
Sun-lab/deconvolution
Code and results for Doug Wilson's deconvolution paper
Sun-lab/isoform
estimation isoform expression and differential expression testing
Sun-lab/IsoDeconvMM
Sun-lab/penalized_estimation
R packages related with penalized regression and graphical model estimation
Sun-lab/pTReCASE
eQTL mapping using RNA-seq data from tumor samples
Sun-lab/rcppreqtl
R package for fitting additive+poo effect in trio experiment
Sun-lab/SurvGPR
R package for "Gaussian process regression for survival time prediction with genome-wide gene expression"
Sun-lab/eQTL-PoO-analysis-pipeline
A pipeline for joint study of eQTL and Parent of Origin (PoO) effect using family trio data