/ICOP_code

Software for analysis of data associated with investigations of Paramecium ICOP proteins

Primary LanguageJupyter NotebookBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

Code for ICOP manuscript

The following code is contained in this repository:

  1. scripts for alternative excision of IESs (Alternative_excision)
  2. scripts for IES retention score correlation analyses (IES_retention)
  3. scripts for sRNA mapping, post-processing and sRNA histograms (sRNA_analysis)
  4. scripts for analysis of knockdown efficiency assessed by RNA-seq (KD-efficiency)
  5. scripts for nucleosome density analyses (Nucleosome_density)
  6. scripts for postprocessing of immunofluorescence images (Postprocessing_IF)