Swart lab

Pinned Repositories

bleties
IES retention analysis from PacBio CCS reads
Language:Python5 1 292
DevPF_code
Language:Jupyter Notebook0 0 00
gbtquick
lazy person's blobtools2
Language:Python1 2 01
ICOP_code
Software for analysis of data associated with investigations of Paramecium ICOP proteins
Language:Jupyter Notebook0 1 20
IES_nuc_density
Scripts and notebook for analysis IES nucleosome densities
Language:Jupyter Notebook0 0 10
Intronarrator
Gene prediction using empirically determined introns
Language:Python3 1 10
karyocode-analysis-porc
Language:Python0 1 00
loxodes-bleties-workflow
Language:Jupyter Notebook0 1 00
loxodes-kmer-comp
Language:Jupyter Notebook0 1 00
pogigwasc
Prediction of genes in genomes with ambiguous stop codons
Language:Java2 1 10

Swart lab's Repositories

Swart-lab/bleties
IES retention analysis from PacBio CCS reads
Language:Python5 1 292
Swart-lab/Intronarrator
Gene prediction using empirically determined introns
Language:Python3 1 10
Swart-lab/pogigwasc
Prediction of genes in genomes with ambiguous stop codons
Language:Java2 1 10
Swart-lab/gbtquick
lazy person's blobtools2
Language:Python1 2 01
Swart-lab/bleties-test-ptet
Benchmarking BleTIES with simulated long reads
Language:Jupyter Notebook0 3 00
Swart-lab/bleties-test-tthe
Benchmarking BleTIES with Tetrahymena long read data
Language:Jupyter Notebook0 2 00
Swart-lab/codetta
Language:Python0 0 00
Swart-lab/DevPF_code
Language:Jupyter Notebook0 0 00
Swart-lab/eugene
Eugene is an integrative genome annotation software
Language:C++0 0 00
Swart-lab/hisat2
Graph-based alignment (Hierarchical Graph FM index)
Language:C++0 0 00
Swart-lab/ICOP_code
Software for analysis of data associated with investigations of Paramecium ICOP proteins
Language:Jupyter Notebook0 1 20
Swart-lab/IES_nuc_density
Scripts and notebook for analysis IES nucleosome densities
Language:Jupyter Notebook0 0 10
Swart-lab/karyocode-analysis-busco
Language:Shell0 1 00
Swart-lab/karyocode-analysis-porc
Language:Python0 1 00
Swart-lab/loxodes-bleties-workflow
Language:Jupyter Notebook0 1 00
Swart-lab/loxodes-kmer-comp
Language:Jupyter Notebook0 1 00
Swart-lab/loxodes-nucleosomes-workflow
Language:Jupyter Notebook0 1 00
Swart-lab/ParTIES
PARamecium Toolbox for Interspersed DNA Elimination Studies
Language:Perl0 1 00
Swart-lab/PORC
Prediction Of Reassigned Codons
Language:Python0 1 00
Swart-lab/telomere-kmer-search
Language:Python0 2 00
Swart-lab/karyocode-workflow
Language:Python1 0
Swart-lab/loxodes-assembly-workflow
Language:Python1 0
Swart-lab/loxodes-intronarrator-workflow
Empirical intron annotation for Loxodes magnus genome assembly
Language:Python1 0
Swart-lab/loxodes-pogigwasc-workflow
Pogigwasc gene prediction of Loxodes magnus genome
Language:Python1 0
Swart-lab/loxodes-srna-workflow
small RNA library processing and analysis
Language:Python1 0
Swart-lab/mnutils
MNase-seq utilities
Language:Python1 0
Swart-lab/pogigwasc-utils
Language:Python1 1
Swart-lab/Porechop
adapter trimmer for Oxford Nanopore reads
Language:C++0 0
Swart-lab/trf_utils
Scripts to reformat TRF output files
Language:Python1 0