This code predicts genetic codes with an alternative normalization scheme to that implemented in the program FACIL.
PORC was used to predict a few new genetic codes in cilates using MMETSP transcriptomes, recorded as genetic codes 27-29 in NCBI Genetic Codes, and also in analyses of karyorelict genetic codes.
git clone https://github.com/Swart-lab/PORC/
cd PORC
PORC can be run with the following command:
./PORC.sh $PATH_TO_PORC_SCRIPTS HMMER_PROCESSES GENOME_FILE_PREFIX GENOME_FILE_SUFFIX PFAM_PATH
See comments in PORC.sh for more details on how to run.