SynBioDex/pySBOL3

Issues

• 'simple_library.nt' not present in the examples directory for it to be accessed by 'getting_started.ipynb' file

  #446 opened 6 months ago by Atishaysjain
  3

• New pylint errors

  #450 opened 6 months ago by jakebeal
  0

• pySHACL fails in Python 3.12 and windows-latest builds

  #444 opened 10 months ago by jakebeal
  1

• Update supported python versions

  #442 opened a year ago by tcmitchell
  0

• Visitor functions do not actually return values

  #437 opened a year ago by jakebeal
  0

• Activity missing wasInformedBy property

  #436 opened a year ago by jakebeal
  0

• Orientation values need to be updated

  #431 opened a year ago by jakebeal
  1

• Improve pylint compatibility

  #433 opened a year ago by tcmitchell
  0

• if the namespace of an object is changed it should be reflected in the object

  #412 opened 2 years ago by JMante1
  14

• Write unit test for feature.py validate function

  #420 opened a year ago by Omarelsherif010
  2

• Make Toplevel.copy() deprecation warning more informative

  #394 opened a year ago by rpgoldman
  4

• Cannot extend `Location` as a `CustomIdentified`

  #414 opened 2 years ago by tcmitchell
  1

• Macro for document create and read

  #408 opened 2 years ago by jakebeal
  0

• PathLike for Document read/write

  #407 opened 2 years ago by jakebeal
  0

• Eliminate empty lines in .nt serializations

  #404 opened 2 years ago by jakebeal
  1

• Problem with python-dateutil requirement

  #428 opened a year ago by Gonza10V
  2

• Can `Location` be extended?

  #427 opened a year ago by tcmitchell
  1

• fix typo in URL of SBOL data model specification

  #424 opened a year ago by Omarelsherif010
  0

• Improve readthedocs formatting

  #325 opened 3 years ago by jakebeal
  3

• Adding SHACL for validating extensions

  #418 opened 2 years ago by bbartley
  0

• Tutorial improvements

  #417 opened 2 years ago by jakebeal
  0

• Adding an object to more than one parent Document

  #416 opened 2 years ago by bbartley
  3

• Namespaces must not end with a slash

  #411 opened 2 years ago by jakebeal
  0

• Error when setting identity for SubComponent

  #410 opened 2 years ago by noahsprent
  4

• Add guidelines for contributors

  #402 opened 2 years ago by tcmitchell
  0

• Actions builds for Windows and Mac are running on Ubuntu Linux

  #399 opened 2 years ago by tcmitchell
  0

• Windows writes SORTED_NTRIPLES with CRLF

  #398 opened 2 years ago by jakebeal
  7

• New copy method is far slower than old copy method

  #393 opened 3 years ago by jakebeal
  0

• Accelerate loading

  #381 opened 3 years ago by jakebeal
  2

• Lookup failure exceptions

  #380 opened 3 years ago by jakebeal
  2

• Clean up ReferencedObject typing

  #324 opened 3 years ago by jakebeal
  2

• Safe construction of identities

  #328 opened 3 years ago by jakebeal
  4

• Detect / prevent namespaces from ending with slash

  #343 opened 3 years ago by jakebeal
  11

• ConfigOptions

  #361 opened 3 years ago by JMante1
  2

• Issues with accessing CombinatorialDerivation value

  #350 opened 3 years ago by abamaj
  10

• Combinatorial Derivation non-standard class init

  #362 opened 3 years ago by JMante1
  2

• Structure Assembly

  #363 opened 3 years ago by JMante1
  2

• Round trip of SBOLTestSuite/SBOL3/entity/model/model.jsonld adds trailing slash

  #329 opened 3 years ago by tcmitchell
  1

• Validation error on references between child objects

  #353 opened 3 years ago by bbartley
  0

• JSONLD serialization includes bogus context

  #349 opened 3 years ago by jakebeal
  1

• TypeError: Expecting string, got <class 'NoneType'>

  #357 opened 3 years ago by bbartley
  1

• doc.add does not work for lists when installed by pip install sbol3

  #352 opened 3 years ago by Gonza10V
  2

• Validation treats missing TopLevel objects as errors

  #348 opened 3 years ago by jakebeal
  5

• Enhancement: Add docstring for constructor for Identified class

  #321 opened 3 years ago by rpgoldman
  1

• Errors in the documentation

  #341 opened 3 years ago by Gonza10V
  2

• Remove set_homespace and get_homespace

  #340 opened 3 years ago by tcmitchell
  0

• Namespace validation breaks on read when default namespace differs

  #337 opened 3 years ago by jakebeal
  4

• Make SBOL objects sortable

  #320 opened 3 years ago by jakebeal
  3

• Component.interfaces should not be plural

  #316 opened 3 years ago by jakebeal
  0

• Interface constructor typing should be lists, not singletons

  #315 opened 3 years ago by jakebeal
  0