SynBioDex/sbol_factory

Issues

• logging permanently disabled in SBOLFactory()

  #77 opened a year ago by jharwell
  0

• PyPDF2 Deprecation Error

  #75 opened 2 years ago by bbartley
  0

• sbol-shacl validation fails when inherited properties are set

  #74 opened 2 years ago by jakebeal
  0

• Handle line endings on Windows

  #72 opened 2 years ago by bbartley
  1

• xsd:float is not recognized as a range for FloatProperty

  #69 opened 2 years ago by bbartley
  0

• rdflib-jsonld is deprecated

  #67 opened 3 years ago by jakebeal
  0

• Confirm that improved ontology files work with SBOL factory

  #64 opened 3 years ago by jakebeal
  1

• Add build matrix to github workflow

  #63 opened 3 years ago by bbartley
  2

• Restore python 3.7 compatibility

  #65 opened 3 years ago by jakebeal
  1

• UML diagrams lack primitive-valued properties for subclasses

  #53 opened 3 years ago by jakebeal
  1

• Diagrams use all empty diamonds

  #56 opened 3 years ago by jakebeal
  2

• prov ontology is given 'default' prefix

  #61 opened 3 years ago by bbartley
  1

• Condense max and min cardinality into plain cardinality

  #62 opened 3 years ago by bbartley
  0

• SBOLFactory shouldn't print class information by default

  #55 opened 3 years ago by jakebeal
  3

• Regression testing fails on SBOL validation checking

  #57 opened 3 years ago by bbartley
  0

• Make sure there is a decent readthedocs

  #54 opened 3 years ago by jakebeal
  0

• Document OWL sublanguage supported by the sbol_factory

  #5 opened 3 years ago by rpgoldman
  15

• Serialize the API?

  #6 opened 3 years ago by rpgoldman
  3

• How to handle URI enums?

  #8 opened 3 years ago by jakebeal
  1

• Specify default values?

  #12 opened 3 years ago by jakebeal
  2

• Declaration of constants?

  #14 opened 3 years ago by jakebeal
  1

• Support for numpy array serialization?

  #7 opened 3 years ago by jakebeal
  0

• Add alternative to rdfs:label for giving python names

  #21 opened 3 years ago by rpgoldman
  1

• Incorporate sbol-owl as git submodule

  #37 opened 3 years ago by bbartley
  1

• Reuse identical graphics

  #46 opened 3 years ago by jakebeal
  2

• User-configurable clusters

  #45 opened 3 years ago by jakebeal
  3

• Repeated generation of some classes

  #50 opened 3 years ago by jakebeal
  0

• Add package name to labels

  #49 opened 3 years ago by jakebeal
  0

• Develop branch should have its version advanced

  #52 opened 3 years ago by jakebeal
  1

• Put LaTeX graphics in subdirectory

  #44 opened 3 years ago by jakebeal
  0

• Constructors should warn of unused arguments

  #20 opened 3 years ago by jakebeal
  0

• Generate specification from comments

  #33 opened 3 years ago by jakebeal
  0

• Duplicate arrows

  #36 opened 3 years ago by jakebeal
  1

• Upgrade to pySBOL3-1.0b6

  #39 opened 3 years ago by jakebeal
  5

• Clean out OPIL references

  #18 opened 3 years ago by jakebeal
  0

• Clean SD2 material out of rdf and sparql directories

  #29 opened 3 years ago by jakebeal
  1

• Validate OWL

  #26 opened 3 years ago by bbartley
  2

• Overriding init functions conflicts with builders

  #2 opened 3 years ago by jakebeal
  1

• 1.0a7 release needs a corresponding release on GitHub

  #38 opened 3 years ago by jakebeal
  1

• Add license

  #28 opened 3 years ago by jakebeal
  0

• Support visitor pattern

  #3 opened 3 years ago by bbartley
  1

• Swap SBOL ontology files

  #9 opened 3 years ago by bbartley
  1

• Change opil:compositionalProperty to sbol:compositionalProperty

  #10 opened 3 years ago by jakebeal
  1

• Regression testing fails on SBOL validation checking

  #32 opened 3 years ago by jakebeal
  2

• UML generation fails with 1.0a6 release

  #30 opened 3 years ago by jakebeal
  0

• Cannot use subclass to PROV-O classes

  #22 opened 3 years ago by jakebeal
  4

• sbol_factory doesn't confuses classes with the same name in different namespaces

  #23 opened 3 years ago by jakebeal
  4

• silent failure with xsd:dateTime

  #24 opened 3 years ago by jakebeal
  1

• Accelerate loading of sbol_factory files

  #15 opened 3 years ago by jakebeal
  0

• Ontology dependencies

  #11 opened 3 years ago by jakebeal
  5