SysBioChalmers/Sco-GEM

Issues

• Memote shows no biomass production

  #149 opened 2 years ago by sammhall
  2

• doc: clarify PR commits in contributor guidelines

  #147 opened 4 years ago by edkerk
  0

• chore: correct README.md with next release

  #144 opened 4 years ago by edkerk
  0

• Invalid annotations?

  #111 opened 4 years ago by smoretti
  4

• fix: acetyl-CoA rewiring from iKS1317

  #127 opened 4 years ago by sulheim
  0

• chore: add model id

  #128 opened 4 years ago by sulheim
  3

• doc/feat: contributing guidelines, files and functions

  #118 opened 4 years ago by edkerk
  0

• docs: link repo to Zenodo

  #65 opened 4 years ago by sulheim
  2

• Unclear what the different model files represent

  #110 opened 4 years ago by smoretti
  2

• chore: initiate Sco-GEM repo

  #15 opened 4 years ago by edkerk
  0

• feat: Name cpk genes

  #64 opened 4 years ago by sulheim
  0

• fix: direction of ICDhyr (isocitrate dehydrogenase)

  #87 opened 4 years ago by sulheim
  2

• feat: include cofactor information from Coze et al., 2013

  #88 opened 4 years ago by sulheim
  0

• fix: alpha and beta variants of glucose-6-phosphate

  #89 opened 4 years ago by sulheim
  2

• fix: direction of ferredoxin-NAPD reductase

  #90 opened 4 years ago by sulheim
  0

• Check if SCO2529 really is a catalase

  #100 opened 4 years ago by sulheim
  1

• Fix duplicated reactions

  #104 opened 4 years ago by sulheim
  2

• fix: clean-up annotations

  #105 opened 4 years ago by edkerk
  6

• Block / Remove reaction R10221

  #106 opened 4 years ago by sulheim
  0

• bug: two unnecessary boundary metabolites

  #136 opened 4 years ago by sulheim
  0

• fix: ids and annotation bugs

  #33 opened 4 years ago by sulheim
  9

• fix: Invalide KEGG ids

  #62 opened 4 years ago by sulheim
  0

• doc: delete gitter repo and update related docs

  #124 opened 4 years ago by sulheim
  2

• feat: additional annotations

  #44 opened 4 years ago by sulheim
  3

• fix: stoichiometric consistency

  #99 opened 5 years ago by sulheim
  1

• fix: cpk exchange reaction

  #85 opened 5 years ago by sulheim
  0

• feat: review reaction bounds

  #54 opened 5 years ago by sulheim
  6

• fix: remove non gene-associated reactions causing loops

  #82 opened 5 years ago by sulheim
  0

• feat: review sink reactions

  #81 opened 5 years ago by sulheim
  0

• feat: dead end / orphan metabolites and blocked reactions

  #80 opened 5 years ago by sulheim
  2

• feat: reaction mass balance and metabolite charge and formula

  #79 opened 5 years ago by sulheim
  1

• Add myo-inositol catabolism genes to knock-out tests

  #77 opened 5 years ago by sulheim
  0

• feat: implement memote QC and CI

  #19 opened 6 years ago by edkerk
  1

• feat: subsystem annotations

  #66 opened 6 years ago by sulheim
  3

• feat: tests

  #43 opened 6 years ago by sulheim
  1

• fix: compare iMK1208-derived parts of iKS1317, iAA1259 and Sco4

  #31 opened 6 years ago by edkerk
  1

• fix: ecScoGEM correct kcat values

  #40 opened 6 years ago by edkerk
  1

• feat: define pipeline to convert scoGEM to ecScoGEM

  #39 opened 6 years ago by edkerk
  1

• doc: requirements file

  #46 opened 6 years ago by sulheim
  3

• feat: use transposon-data to improve model

  #56 opened 6 years ago by sulheim
  0

• feat: include find energy generating cycles in the tests

  #48 opened 6 years ago by sulheim
  1

• fix: complex grRules

  #51 opened 6 years ago by edkerk
  3

• feat: improve metabolite annotations

  #30 opened 6 years ago by sulheim
  2

• feat: expand the calcium-dependent antibiotic pathway

  #50 opened 6 years ago by sulheim
  0

• style: sort model entities and export

  #37 opened 6 years ago by sulheim
  1

• fix: biomass equation

  #13 opened 6 years ago by edkerk
  4

• fix: assign SBO term to all metabolites, reactions and genes

  #29 opened 6 years ago by edkerk
  2

• feat: merge and curate Sco4 specific rxns and mets

  #17 opened 6 years ago by edkerk
  0

• feat: merge iAA1259 specific rxns and mets

  #18 opened 6 years ago by edkerk
  0

• fix: apply fixes from iKS1317

  #16 opened 6 years ago by edkerk
  0