Pinned Repositories
EnTAPnf
Functional Annotation of Gene Lists
FUNC-E
FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID
GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
GEMprep
gene-oracle
Feature extraction algorithm for genomic data
granny
GSForge
A gene (feature) selection toolset for gene expression matrix (GEM) data.
KINC
Knowledge Independent Network Construction
KINC.R
Supplemental R package for KINC
kube-runner
A tool for running bioinformatics workflows on a Kubernetes cluster
SystemsGenetics's Repositories
SystemsGenetics/GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
SystemsGenetics/gene-oracle
Feature extraction algorithm for genomic data
SystemsGenetics/KINC
Knowledge Independent Network Construction
SystemsGenetics/kube-runner
A tool for running bioinformatics workflows on a Kubernetes cluster
SystemsGenetics/FUNC-E
FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID
SystemsGenetics/granny
SystemsGenetics/EnTAPnf
Functional Annotation of Gene Lists
SystemsGenetics/GEMprep
SystemsGenetics/GSForge
A gene (feature) selection toolset for gene expression matrix (GEM) data.
SystemsGenetics/KINC.R
Supplemental R package for KINC
SystemsGenetics/ACE
Accelerated Computational Engine (ACE) is a GPU-enabled framework to simplify creation of GPU-capable applications
SystemsGenetics/GEM_Smasher
A gene expression matrix exploration tool set.
SystemsGenetics/KINC-nf
Nextflow pipeline for KINC
SystemsGenetics/transcript_corral
SystemsGenetics/BioDepVis
SystemsGenetics/pynome
Genome collection script for the SciDAS project.
SystemsGenetics/awesome-feltus
A repository for how to be awesome in the Feltus lab
SystemsGenetics/configs
Config files used to define parameters specific to compute environments at different Institutions
SystemsGenetics/GSForgeDev
A placeholder repository for the dev version of the docs website.
SystemsGenetics/irods-docker
Docker / Singularity image for using the iRODS client commands on HPC systems
SystemsGenetics/KINC-v1-Singularity
Instructions for running KINC v1.0 using a Singularity Image
SystemsGenetics/pynome-nf
Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.