SystemsGenetics/gene-oracle

Issues

• Incorporate some best practices from nf-core

  #23 opened 3 years ago by bentsherman
  1

• Convergence Warning

  #22 opened 4 years ago by nnellig
  0

• Investigate making this a pypi or a bioconda package.

  #19 opened 5 years ago by csheare
  0

• gather corona genome strain data

  #21 opened 5 years ago by csheare
  0

• rehash with click for package development

  #20 opened 5 years ago by csheare
  0

• Arguments mixed up in nextflow run

  #18 opened 5 years ago by biggstd
  0

• Add a script to perform a single iteration of phase 2

  #12 opened 5 years ago by bentsherman
  1

• Improve the procedure for selecting candidate / non-candidate genes

  #13 opened 5 years ago by bentsherman
  1

• Train / evaluate multiple TF models in parallel

  #17 opened 5 years ago by bentsherman
  3

• Add option to use other classifiers

  #15 opened 5 years ago by bentsherman
  1

• Autoencoder and autoencoder.py needs updated

  #7 opened 5 years ago by csheare
  0

• Visualization script for inputs, weights, intermediate blobs

  #1 opened 5 years ago by bentsherman
  0

• update to Python 3

  #4 opened 5 years ago by csheare
  1

• ROC graphs

  #5 opened 5 years ago by csheare
  0

• put confusion matrix and roc in validation file

  #6 opened 5 years ago by csheare
  0

• Shuffle Bug

  #10 opened 5 years ago by ctargon
  1

• Improve the way that gene oracle consumes input data

  #14 opened 5 years ago by bentsherman
  1

• Add basic usage example using simulated data

  #16 opened 5 years ago by bentsherman
  1

• Add a script to compute p-values

  #11 opened 5 years ago by bentsherman
  1

• rename GTEx to more generic

  #3 opened 6 years ago by csheare
  0

• rename repo

  #2 opened 6 years ago by csheare
  0