Pinned Repositories
awesome-workflow
An awesome list of workflow systems
fetchngs2rnaseq
Meta-pipeline for nf-core/fetchngs -> nf-core/rnaseq
ledger
A simple web-app to manage credits and debts among peers
ml-toolkit
A collection of command-line wrappers of Python libraries for machine learning tasks
nf-boost
Experimental features for Nextflow
tesseract
A tool for creating resource prediction models for scientific workflows
mlbd
Repository for the machine learning / big data creative inquiry
nextflow
A DSL for data-driven computational pipelines
KINC
Knowledge Independent Network Construction
wsbf.net
The WSBF website.
bentsherman's Repositories
bentsherman/nf-boost
Experimental features for Nextflow
bentsherman/tesseract
A tool for creating resource prediction models for scientific workflows
bentsherman/fetchngs2rnaseq
Meta-pipeline for nf-core/fetchngs -> nf-core/rnaseq
bentsherman/ml-toolkit
A collection of command-line wrappers of Python libraries for machine learning tasks
bentsherman/awesome-workflow
An awesome list of workflow systems
bentsherman/ledger
A simple web-app to manage credits and debts among peers
bentsherman/minecraft-server
A simple cloud-based wrapper for a Minecraft server with process management
bentsherman/minibench
Nextflow pipeline for lightweight benchmarking
bentsherman/nextflow-gcloud-docker
bentsherman/nextflow-palmetto-demo
Creating and running Nextflow pipelines on Clemson's Palmetto cluster
bentsherman/pbs-toolkit
A collection of user scripts for a PBS/Tmod environment
bentsherman/bentsherman.github.io
My digital garden
bentsherman/codeflow
Flow graphs for your code
bentsherman/cuhackit2020
Jupyter notebook for Intro to Python workshop
bentsherman/GEMmaker
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
bentsherman/kinc-sketches
Experimental implementations of KINC in various languages and programming models
bentsherman/libgmm
GPU Accelerated Expectation Maximization for Gaussian Mixture Models using CUDA
bentsherman/nf-float
MemVerge Netflow Plugin
bentsherman/nf-head-job-benchmark
Nextflow pipeline to benchmark Nextflow resource usage
bentsherman/nf-report
Nextflow plugin for generating an example report for workflow runs
bentsherman/nf-tests
Nextflow tests
bentsherman/nn-arch-tester
Python scripts for experimenting with neural net architectures
bentsherman/open-pixel-art
A collaborative pixel art project to teach people how to contribute to open-source
bentsherman/risk
bentsherman/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
bentsherman/sc18-demo
bentsherman/sonn-tester
Python scripts for experimenting with self-organizing networks
bentsherman/sudoku
bentsherman/vue2048
The 2048 game in Vue.js
bentsherman/xpack-amzn
AWS Xpack for Nextflow