Terrestrial Ecosystem Science and Technology (TEST) Group (Active Archive)
The Terrestrial Ecosystem Science and Technology (TEST) group. This is an active archive managed by Shawn P. Serbin but will be migrated to a new organization
Upton, NY
Pinned Repositories
exploringCOGs
A sandbox of scripts and data to explore the use of cloud-optimized geotiff datasets to facilitate direct data ingest into analysis workflows
Lamour_et_al_2021_Letter_on_Marquez_et_al_2021_paper
Implementation of Marquez et al. 2021 new gas exchange theory
LeafGasExchange
An R package for fitting and simulating leaf level gas exchange
meeting_demos
Repository for examples used in meetings or presentations
MoDaCS
Modular Data Collection System
PiCam
The PiCam time-lapse camera system. A nRF52840 managed, low power sensor node and Raspberry Pi camera system designed for autonomous operations in remote regions for the collection of vegetation phenology data
R-Canopy_Photosynthesis
Testbed for canopy scaling and modeling of Photosynthesis and GPP
R-GasExchange
Simple scripts for processing LiCor 6400 gas exchange data
UniSpec_Processing
Python code for processing the output of the Unispec-DC spectrometer
Viskari_etal_ED2_radiation_uncertainty
The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling
Terrestrial Ecosystem Science and Technology (TEST) Group (Active Archive)'s Repositories
TESTgroup-BNL/LeafGasExchange
An R package for fitting and simulating leaf level gas exchange
TESTgroup-BNL/R-Canopy_Photosynthesis
Testbed for canopy scaling and modeling of Photosynthesis and GPP
TESTgroup-BNL/R-GasExchange
Simple scripts for processing LiCor 6400 gas exchange data
TESTgroup-BNL/UniSpec_Processing
Python code for processing the output of the Unispec-DC spectrometer
TESTgroup-BNL/exploringCOGs
A sandbox of scripts and data to explore the use of cloud-optimized geotiff datasets to facilitate direct data ingest into analysis workflows
TESTgroup-BNL/hytools_helpers
A set of examples and scripts to help with using EnSpec_hytools
TESTgroup-BNL/Matlab-Canopy_Photosynthesis
Testbed for canopy scaling and modeling of Photosynthesis and GPP
TESTgroup-BNL/MoDaCS
Modular Data Collection System
TESTgroup-BNL/PiCam
The PiCam time-lapse camera system. A nRF52840 managed, low power sensor node and Raspberry Pi camera system designed for autonomous operations in remote regions for the collection of vegetation phenology data
TESTgroup-BNL/Viskari_etal_ED2_radiation_uncertainty
The influence of canopy radiation parameter uncertainty on model projections of terrestrial carbon and energy cycling
TESTgroup-BNL/CSVQA
Tools for QA checks, fixes and post-processing for CSV files
TESTgroup-BNL/Lamour_et_al_2021_Letter_on_Marquez_et_al_2021_paper
Implementation of Marquez et al. 2021 new gas exchange theory
TESTgroup-BNL/meeting_demos
Repository for examples used in meetings or presentations
TESTgroup-BNL/NGSapFlux
Next-generation Sap Flux. Repository for storing schematics, code, and other information related to the development of custom sap flux sensors
TESTgroup-BNL/NGSapFlux_r
An R package for working with and processing sap flux generated using the BNL TEST group NGSapFlux sensor package
TESTgroup-BNL/pca10059_PiCam
TESTgroup-BNL/canopyRT
A sandbox for exploring leaf/canopy RT representations in LSMs
TESTgroup-BNL/Ely_etal_2019_JournalOfExperimentalBotany
Leaf-level Spectra-trait PLSR models to estimate key leaf traits associated with source–sink balance and carbon–nitrogen status using leaf optical properties
TESTgroup-BNL/example_gee_uas_scripts
Small repository of example Google Earth Engine Jupyter Notebooks
TESTgroup-BNL/FCP
FACE Control Program
TESTgroup-BNL/gee_examples
A small repo containing GEE, rgee, and Python GEE examples
TESTgroup-BNL/JSONFileField
TESTgroup-BNL/ngeearctic_elm_containers
E3SM Land Model (ELM) containers for NGEE-Arctic
TESTgroup-BNL/nvbbcc
Initial location for developing workflow code for the NVBBCC effort. This location is expected to migrate to a NVBBCC organization at some point
TESTgroup-BNL/R-UniSpecDC-Tools
A toolkit for processing UniSpec-DC spectral files
TESTgroup-BNL/Rogers_etal_NGEEArctic_LightResponse
Repository containing LiCor photosynthetic light response curve data, R scripts for fitting the data, and our script for calculating leaf absorptance from measured reflectance
TESTgroup-BNL/UniSpec_Trigger
Python scripts for aquiring data from Unispec-DC spectrometer
TESTgroup-BNL/Wu_etal_2019_NewPhytologist
Leaf-level spectra-trait PLSR models to estimate leaf age and Vcmax of tropical tree species using measurements of leaf reflectance