Testbed for canopy scaling and modeling of photosynthesis and GPP
Corresponding authors
Drs. Jin Wu and Shawn Serbin
Environmental and Climate Sciences Department
Brookhaven National Laboratory
jinwu@bnl.gov; sserbin@bnl.gov
Easiest way to install is via install_github from the devtools package.
install.packages('devtools') # if you haven't already installed this package and dependencies
library(devtools) # load the library
install_github("TEST-BNL/R-Canopy_Photosynthesis") # install the package from GitHubIf you want a specific branch, do install_github(..., ref="<branch>").
From there, you should be able to load the package in your typical R session.
# Leaf level responses to light and temperature
file <- system.file("examples/Example_Leaf_Photosynthesis.R",package="CanopyPhotosynthesis")
source(file)
# This should generate two plots, one showing the An vs PAR and the second showing the temperature sensitivities of photosynthesis and key parameters such as Vcmax, Jmax, and Rd
# MORE IN DEVELOPMENTFor more information, see the vignette (vignettes/pecanrtm.vignettes.Rmd). [UNDER DEVELOPMENT]