TIO-IKIM/CellViT

Issues

• 20x Scale Bugs

  #55 opened a month ago by KompressorSC
  4

• plot_results() function in "cell_segmentation/inference /inference_cellvit_experiment_pannuke.py"

  #60 opened a month ago by PingjunChen
  0

• pydantic validation errors

  #61 opened a month ago by Lxltxpku
  1

• Big svs Prediction

  #19 opened a year ago by Transformer-man
  7

• ROI Support

  #52 opened a month ago by KompressorSC
  3

• Generate cell contours for the three folds of the Pannuke dataset

  #58 opened a month ago by CCSSMP
  1

• Results of Inference

  #59 opened a month ago by mdsatria
  1

• edge_information["edge_patches"] can be None in cell_detection.py

  #56 opened a month ago by PingjunChen
  1

• Dockerfile may be of use

  #57 opened a month ago by PingjunChen
  1

• Do you find the training unstable for ViT-S based encoders?

  #53 opened a month ago by swarajnanda2021
  2

• Cell type label

  #54 opened a month ago by JiawenChenn
  1

• three-fold cross-validation

  #51 opened 2 months ago by CYYJL
  1

• Train with one nuclei type

  #50 opened 3 months ago by Vadori
  5

• Docker Image progress

  #29 opened 6 months ago by tomvars
  2

• Error report for cellvit_cpp_net.py

  #49 opened 3 months ago by won5830
  2

• Comparison to PLUTO paper?

  #48 opened 3 months ago by cgebbe
  1

• Issue with downsampling

  #47 opened 4 months ago by pkeller00
  3

• About nuclear localization

  #46 opened 4 months ago by CYYJL
  0

• cell_detection_mp looking for files that don't exist

  #45 opened 4 months ago by bendmartin
  1

• XML annotations support

  #44 opened 4 months ago by thaomaidang
  0

• cannot location any cell

  #43 opened 5 months ago by RNA429
  6

• Distributed training in CellViT

  #42 opened 5 months ago by CYYJL
  1

• CoNSeP embedding analysis code

  #28 opened a year ago by EmanuelSoda
  1

• MuNoSeg data set execution code

  #41 opened 6 months ago by CYYJL
  6

• Inference speed improved by x100 for postprocessing,But there are still serious time-consuming

  #20 opened 6 months ago by 464hee
  5

• How to get model prediction for a single pannuke image?

  #37 opened 6 months ago by neoyinzhanghan
  2

• Run Inference on CPU

  #40 opened 6 months ago by mzhoufulai
  1

• Application to non-contiguous patches

  #39 opened 7 months ago by florianbuettner
  1

• Predicting on 40x slides using 20x model

  #34 opened 9 months ago by bgginley
  5

• Can't reproduce the results of your paper

  #36 opened 9 months ago by ziwei-cui
  4

• When performing inference on the MoNuSeg dataset, the following code will ignore some regions of a image.

  #35 opened 9 months ago by windygoo
  2

• I have sent an email to you, please check it.

  #33 opened 9 months ago by windygoo
  0

• eval_every must equal to 1

  #32 opened 10 months ago by windygoo
  1

• How to calculate the STD metrics shown in Table 3 of your paper?

  #31 opened 10 months ago by windygoo
  4

• Tiled prediction does not return proper results for all tiles

  #30 opened 10 months ago by JLrumberger
  25

• The results dir is lost.

  #27 opened a year ago by windygoo
  1

• How about the segmentation performance of CellViT-SAM-H with CPP-Net decoder?

  #26 opened a year ago by windygoo
  1

• Binary weight factors?

  #22 opened a year ago by GlastonburyC
  1

• Question about the bPQ metric.

  #25 opened a year ago by windygoo
  3

• How about the segmentation performance on other benchmarks like CoNSeP, CPM-17?

  #24 opened a year ago by windygooo
  4

• The official Panuke datset split?

  #17 opened a year ago by JackgreyL
  3

• How about the performance using ImageNet pre-tranied ViT?

  #23 opened a year ago by windygooo
  1

• Train a data set with only one tissue type

  #21 opened a year ago by Transformer-man
  3

• Error reported in execution example

  #18 opened a year ago by cowrturn
  0

• Loss not decrease on Lizard dataset

  #15 opened a year ago by Lewislou
  3

• Training is currently broken

  #16 opened a year ago by FabianHoerst
  0

• Running on multiple gpus

  #11 opened a year ago by Xujingkk
  1

• How to predict multiple single PNG images, for example, the image size is 512 * 512

  #14 opened a year ago by Transformer-man
  2

• Training and inference transformations not found

  #13 opened a year ago by huangzhii
  2

• Hello, can you provide a smaller SVS file, such as 5000 * 5000, for testing

  #12 opened a year ago by Transformer-man
  2