Pinned Repositories
aDNAxRefPanel
A pipeline to merge ancient DNA sequencing data with modern genotyping data
agar22_genome_assembly
This is part of agar22 workshop
Ancient_mtDNA_Pipeline
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
base_changer
Changes bases in a fasta file at user specified positions
chtc-website-source
Source markdown and contents of the CHTC website
docker_phylogenetics
Phylogenetics Tools in Docker Containers
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
GAworkshop
Genome Analysis Workshop (Jena 2016) material
HGDP_PopStruct_Exercise
A classroom exercise using HGDP SNP data to introduce population structure concepts
human_genomics_pipeline
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Tastulek's Repositories
Tastulek/aDNAxRefPanel
A pipeline to merge ancient DNA sequencing data with modern genotyping data
Tastulek/agar22_genome_assembly
This is part of agar22 workshop
Tastulek/Ancient_mtDNA_Pipeline
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
Tastulek/base_changer
Changes bases in a fasta file at user specified positions
Tastulek/chtc-website-source
Source markdown and contents of the CHTC website
Tastulek/docker_phylogenetics
Phylogenetics Tools in Docker Containers
Tastulek/eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Tastulek/GAworkshop
Genome Analysis Workshop (Jena 2016) material
Tastulek/HGDP_PopStruct_Exercise
A classroom exercise using HGDP SNP data to introduce population structure concepts
Tastulek/human_genomics_pipeline
A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.
Tastulek/mapache
mapping pipeline for ancient DNA
Tastulek/Neo-
An attempt to learn new knowledge
Tastulek/phylo-class-social
Dummy repository to practice git/github
Tastulek/phylogenetics-class
A course in the theory and practice of phylogenetic inference from DNA sequence data
Tastulek/PSReliP
An integrated pipeline for analysis and visualization of Population Structure and Relatedness based on genome-wide genetic variant data
Tastulek/Tastulek
This is my profile repo.
Tastulek/tkgwv2
An ancient DNA relatedness pipeline for ultra-low coverage whole genome shotgun data