OMERO for Developers

Materials for the OMERO for Developers workshop at the Jackson Laboratory, which covers:

Using BlitzGateway and ezomero to view images from OMERO in Python
Retrieving thumbnails using the JSON API
Introduction to the Zarr file format

Set up your environment

If you use Conda:

conda env create -f environment.yml

Otherwise:

You'll need to install dependencies yourself. This workshop will use jupyterlab, ezomero, matplotlib, ome-zarr and omero-cli-zarr. Latest versions should be fine.

Workshop notebooks