omero
There are 158 repositories under omero topic.
ome/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
TheJacksonLaboratory/ezomero
A module with convenience functions for writing Python code that interacts with OMERO.
tlambert03/napari-omero
Browse your OMERO database from within napari.
ome/docker-example-omero
OMERO Docker compose example
ome/omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
ome/omero-py
Python project containing Ice remoting code for OMERO
ome/omero-iviewer
An OMERO.web app allowing to view images
ome/devspace
Continuous integration tool for OME projects
ome/omero-ms-zarr
Experimental micro-service for implementing the Zarr spec over HTTP
ome/omero-web
Django-based OMERO.web client
ome/omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
ome/omero-figure
An OMERO.web app for creating Figures from images in OMERO
NL-BioImaging/biomero
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
ome/omero-server-docker
OMERO.server production docker image
ome/omero-scripts
Core OMERO Scripts
ome/omero-deployment-examples
Examples playbooks for installing OMERO with Ansible and Docker
GReD-Clermont/simple-omero-client
Maven project to easily connect to OMERO.
openmicroscopy/omero-example-scripts
Plugins for OMERO
BiologyTools/BioGTK
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
ome/omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
hip-satomi/microbeSEG
Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data
manics/kubernetes-omero
Kubernetes Helm charts for OMERO
ome/omero-insight
Gradle project containing insight java client for OMERO
sorgerlab/OMERO.forms
Extension to OMERO.web to enhance metadata input and provide provenance
ome/omero-web-docker
OMERO.web production docker image
TheJacksonLaboratory/jax-omeroutils
A module and scripts for working with OMERO
ome/omero-mapr
An OMERO.web app allowing to browse the data through attributes linked to the image
ome/omero-server
Gradle project containing main server logic for OMERO
ome/rOMERO-gateway
OMERO R Gateway
TheJacksonLaboratory/omero_for_developers
material for the "OMERO for developers" workshop.
hip-satomi/ObiWan-Microbi
Omero based integrated Workflow for annotating Microbes in the Cloud
NFDI4BIOIMAGE/omero-vitessce
OMERO.web plugin for the Vitessce multimodal data viewer.
NL-BioImaging/biomero-scripts
Scripts for use with BIOMERO