Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
bonito
Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
Clair3
Clair3 with optional read haplotype phasing (for pileup)
DecCompiler
CS445 Project, extension of BrainF*ck to decimal
DragonCompiler
PASCAL compiler implemented in C for CS445
nPoRe
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
S4-Simple-Small-SDP-Solver
MATLAB Software for SemiDefinite Programming
SquiggleFilter
Hardware accelerator for real-time ReadUntil filtering of nanopore sequencing squiggles.
vcfdist
vcfdist: Accurately benchmarking phased variant calls
TimD1's Repositories
TimD1/vcfdist
vcfdist: Accurately benchmarking phased variant calls
TimD1/nPoRe
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
TimD1/SquiggleFilter
Hardware accelerator for real-time ReadUntil filtering of nanopore sequencing squiggles.
TimD1/S4-Simple-Small-SDP-Solver
MATLAB Software for SemiDefinite Programming
TimD1/DragonCompiler
PASCAL compiler implemented in C for CS445
TimD1/bioconda-recipes
Conda recipes for the bioconda channel.
TimD1/bonito
TimD1/Clair
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
TimD1/Clair3
Clair3 with optional read haplotype phasing (for pileup)
TimD1/DecCompiler
CS445 Project, extension of BrainF*ck to decimal
TimD1/DotFiles
Contains a script to regenerate all my config files including .vimrc, .bashrc
TimD1/GenDP
GenDP: A Dynamic Programming Framework for Genome Sequencing Analysis
TimD1/genome-data-integration
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
TimD1/HonorsThesis
TimD1/JugglingBalls
TimD1/lm-evaluation-harness
A framework for few-shot evaluation of autoregressive language models.
TimD1/manim
TimD1/NeedleTail
long read aligner
TimD1/pb-human-wgs-workflow-wdl
TimD1/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
TimD1/RayTracer
TimD1/RecipeBook
TimD1/Scout
TimD1/SudokuSolver
TimD1/training
Nextflow training material
TimD1/xenclient-oe