Scout

A basic CNN which can be trained to detect specific candidate variants given a read pileup.

Developer Quickstart

$ git clone https://github.com/TimD1/Scout.git
$ cd Scout
$ python3 -m venv venv3 --prompt scout
$ source venv3/bin/activate
(scout) $ pip install --upgrade pip
(scout) $ pip install -r requirements.txt
(scout) $ python setup.py develop
(scout) $ scout --help