Fix incredibly rare edge case when assigning credit to variants at same position
TimD1 opened this issue · 1 comments
TimD1 commented
When comparing PAV to T2T, there are 3 cases (out of 7 million variants) where adjacent INS+DEL variants cause issues with credit assignment. This happens at
- sc 124112,
chr5:80,538,408 - sc 77422,
chr11:41,966,547 - sc 1741,
chr17:1,131,664
To view these errors, uncomment the "Non-zero edit distance..." warning on line 1235 of dist.cpp.
TimD1 commented
Closing, since v2.5.0 updates the behavior of sync points and fixes these issues.