Topp-Roots-Lab

A collection of projects designed to analyze phenotypic plant data by the Topp lab at the Donald Danforth Plant Science Center.

St. Louis, MO

Pinned Repositories

3d-root-crown-analysis-pipeline
A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.
Language:Python31
3D-Sorghum-Inflorescence
Language:C++11
3D_reconstruction
Algorithm for 3d reconstruction from rotational image sequence
Language:C++03
Gia3D
Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton".
Language:C++10
Grapevine-inflorescence-architecture
Language:MATLAB31
python-rawtools
Utility library for consuming and manipulating x-ray volume data in .raw format.
Language:Python0 2 152
rsa-gui
User-controlled pipeline for analyzing plant root system architecture
Language:Java34
rsa-tools
External tools used by the GUI for analyzing plant root system architecture
Language:C++00
taghelper
Python scripts that allow synching of fieldbooks, the tagdb, and barcode strings.
Language:Python00
timeseries_analysis
scripts used for analysis of root growth
Language:R04

Topp-Roots-Lab/3d-root-crown-analysis-pipeline
A pipeline to process 3-D volumes (.raw) of maize root crowns. Also known as XRCAP.
Language:Python31
Topp-Roots-Lab/Grapevine-inflorescence-architecture
Language:MATLAB31
Topp-Roots-Lab/rsa-gui
User-controlled pipeline for analyzing plant root system architecture
Language:Java34
Topp-Roots-Lab/3D-Sorghum-Inflorescence
Language:C++11
Topp-Roots-Lab/Gia3D
Root3D Skeleton Traits by Olga Symonova. Also known as "skel" or "Skeleton".
Language:C++10
Topp-Roots-Lab/3D_reconstruction
Algorithm for 3d reconstruction from rotational image sequence
Language:C++03
Topp-Roots-Lab/python-rawtools
Utility library for consuming and manipulating x-ray volume data in .raw format.
Language:Python0 2 152
Topp-Roots-Lab/rsa-tools
External tools used by the GUI for analyzing plant root system architecture
Language:C++00
Topp-Roots-Lab/taghelper
Python scripts that allow synching of fieldbooks, the tagdb, and barcode strings.
Language:Python00
Topp-Roots-Lab/timeseries_analysis
scripts used for analysis of root growth
Language:R04
Topp-Roots-Lab/New3DTraitsForRPF
Language:MATLAB
Topp-Roots-Lab/soil-analysis-scripts
Hub for various scripts involved in quantifying soil metrics
Language:R
Topp-Roots-Lab/TopoRoot
Language:HTML
Topp-Roots-Lab/Topp-Roots-Lab.github.io
Lab website
Language:HTML