This repo contains scripts used along side the RSA-GiA suite of tools to analyze root system architectures. Currently, there are two Python scripts that complete a task, and each has a corresponding C++ script used to set a uid for each respectively.
Due to user and group restrictions, it's necessary to elevate the priveleges and set a uid for these scripts. However, since Linux now ignores the setuid on all interpreted executables for security reasons, we have to use a binary file to perform the setuid. Addtional information can be found here: https://unix.stackexchange.com/a/2910
This script renames a directory in the original_images folder.
Contains the binaries and scripts for each component run by RSA-GiA.
These include,
- GiaRoots (a.k.a., Gia2D)
- Reconstruction & Skeleton (RootworkPers)
- File management scripts
- Quality control scripts
This script creates the directory subtree in the original_images folder, which corresponds the names of the files located in some directory. It's primary function is to move image sets into a designated folder for the next steps in processing.
When installing a new instance of RSA-GiA, you will need to include these as well.
rsa-mv2orig-launcher.cpp sets the uid when executing rsa-mv2orig.py.
rsa-renameorig-launcer.cpp sets the uid when executing rsa-renameorig.py.
Both C++ scripts include hardcoded locations for the Python scripts that they execute. Remember to recompile the respective script if you change these locations.
Ideally, compile the C++ script(s) on the system that will be executing them. Below is an example of how to compile the rsa-mv2orig-launcher on Ubuntu or CentOS in terminal.
g++ rsa-mv2orig-launcher.cpp -o rsa-mv2orig-launcher