Pinned Repositories
ASEproc
ASEproc can help user to find allele specific expression site from RNA-seq data. We also built a graph procedure to help user draw the scatter plot.
checkSuppReads
CircMiMi
A package for constructing CLIP-seq data-supported circRNA-miRNA-mRNA interactions
circQTL_ASD
circRNA_ASD
Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
circRNA_features
circRNAFinder
a tool for identifying circular RNAs using RNA-Seq data
ICARES
NCLscan
We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcripts (fusion, trans-splicing, and circular RNA) from paired-end RNA-seq data.
NCLscan-hybrid
TreesLab's Repositories
TreesLab/NCLscan
We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcripts (fusion, trans-splicing, and circular RNA) from paired-end RNA-seq data.
TreesLab/CircMiMi
A package for constructing CLIP-seq data-supported circRNA-miRNA-mRNA interactions
TreesLab/circRNA_ASD
Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
TreesLab/circRNAFinder
a tool for identifying circular RNAs using RNA-Seq data
TreesLab/NCLscan-hybrid
TreesLab/ASEproc
ASEproc can help user to find allele specific expression site from RNA-seq data. We also built a graph procedure to help user draw the scatter plot.
TreesLab/checkSuppReads
TreesLab/circQTL_ASD
TreesLab/circRNA_features
TreesLab/ICARES
TreesLab/ncl-exon-number-extractor
TreesLab/NCLcomparator
a comprehensive tool for analyzing non-co-linear (NCL) transcripts (fusion, trans-splicing, and circular RNA)
TreesLab/NCLtk
a toolkit to diagnose ambiguous alignment in circRNA events
TreesLab/TSscan
The TSscan Pipeline