TreesLab/NCLscan

Issues

• There are no main datasets assigned.

  #31 opened 2 years ago by kopardev
  1

• Using too much RAM (memory)

  #30 opened 2 years ago by kopardev
  1

• can not generate the CircRNA with NCLscan version

  #29 opened 2 years ago by JianGuoZhou3
  3

• Failed to HRA000524 dataset (https://ngdc.cncb.ac.cn/gsa-human/browse/HRA000524)

  #28 opened 3 years ago by JianGuoZhou3
  7

• NCLscan CAN NOT work anymore, it belongs to the License that expired on 9 Aug 2021?

  #27 opened 3 years ago by JianGuoZhou3
  0

• No common_IDs between {prefix}.JS.seq_1 and {prefix}.JS.seq_2

  #26 opened 3 years ago by selkovjr
  0

• some samples can't get any result by NCLscan

  #25 opened 4 years ago by JianGuoZhou3
  12

• Error: Cannot open input sequence files. output/clean.main.unmapped_1.fastq output/clean.main.unmapped_2.fastq

  #24 opened 4 years ago by JianGuoZhou3
  18

• Can we choose another tools?

  #23 opened 4 years ago by JianGuoZhou3
  0

• novoalign fails to create index

  #22 opened 5 years ago by BarryDigby
  5

• NCLscan finishes with an empty result file

  #21 opened 5 years ago by HosseinAsghari
  5

• NCLscan and unpaired read data?

  #20 opened 6 years ago by wolfgangrumpf
  3

• Alternative to Novalign?

  #19 opened 6 years ago by wolfgangrumpf
  0

• error : Format Error! Z3 is not available!

  #11 opened 6 years ago by misik
  1

• Where are Total number of all support reads, Total number of junc-reads, Total number of span-reads in .result file

  #5 opened 6 years ago by NitinMandloi
  19

• JSFilter Segmentation fault

  #7 opened 6 years ago by arthuryxt
  5

• Is free version of novoalign not adequate to NCLscan ?

  #9 opened 6 years ago by tyaoi
  9

• NCLscan error: "does not appear to be a valid novoindex. Code 9"

  #15 opened 6 years ago by Swadha22
  3

• Not reading files from the dirctory

  #12 opened 6 years ago by archu87
  15

• compilation error with GCC8

  #17 opened 6 years ago by peutch
  2

• Error in NCLScan Run

  #8 opened 6 years ago by onkarnath89
  0

• Reference index

  #10 opened 8 years ago by misik
  1

• Is it possible to retrieve the pseudo-references??

  #6 opened 8 years ago by Aufiero
  1

• How the last 2 parameters in configuration file: config.txt affect results and when the updated version will probably be released?

  #4 opened 8 years ago by linatbeishan
  3

• why look for tools in the current working directory?

  #3 opened 8 years ago by brianjohnhaas
  1

• Where's the source code?

  #2 opened 8 years ago by brianjohnhaas
  3

• Issues and question NCLscan_v1.4

  #1 opened 8 years ago by vincenthahaut
  11