Turaga Lab

Pinned Repositories

DECODE
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Language:Python98 7 13326
flybody
MuJoCo fruit fly body model and reinforcement learning tasks
Language:Python104 6 1310
flyvis
A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.
Language:Python43 6 211
fouriernet
Implementation of Fourier convolution and FourierNet/FourierUNet in JAX and PyTorch
Language:Python2 4 00
malis
MALIS structured loss function for supervised learning of segmentation and clustering
Language:Python18 4 613
nyroglancer
jupyter notebook extension to visualize numpy arrays with the neuroglancer
Language:Python2 7 00
slurm_cluster
Configuration files, scripts, and howtos for using the slurm cluster.
Language:Python2 7 00
snapshotscope
Differentiable 4f microscope/phase mask simulation
Language:Python7 3 02
vae
Model-agnostic variational autoencoder tools
Language:Python3 5 01
wormvae
Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022
Language:Jupyter Notebook11 3 12

Turaga Lab's Repositories

TuragaLab/flybody
MuJoCo fruit fly body model and reinforcement learning tasks
Language:Python104 6 1310
TuragaLab/DECODE
This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)
Language:Python98 7 13326
TuragaLab/flyvis
A connectome-constrained deep mechanistic network (DMN) model of the fruit fly visual system in PyTorch.
Language:Python43 6 211
TuragaLab/malis
MALIS structured loss function for supervised learning of segmentation and clustering
Language:Python18 4 613
TuragaLab/wormvae
Connectome-constrained Latent Variable Model of Whole-brain Neural Activity, ICLR 2022
Language:Jupyter Notebook11 3 12
TuragaLab/snapshotscope
Differentiable 4f microscope/phase mask simulation
Language:Python7 3 02
TuragaLab/vae
Model-agnostic variational autoencoder tools
Language:Python3 5 01
TuragaLab/fouriernet
Implementation of Fourier convolution and FourierNet/FourierUNet in JAX and PyTorch
Language:Python2 4 00
TuragaLab/nyroglancer
jupyter notebook extension to visualize numpy arrays with the neuroglancer
Language:Python2 7 00
TuragaLab/slurm_cluster
Configuration files, scripts, and howtos for using the slurm cluster.
Language:Python2 7 00
TuragaLab/decode_fish
Language:Jupyter Notebook1 3 01
TuragaLab/jhu-janelia-ml-demo
Demo notebooks for JHU bootcamp at Janelia
Language:Jupyter Notebook1 2 00
TuragaLab/MSRI2018_PupilCodedMicroscope
MSRI 2018 summer school (Group 7)
Language:Jupyter Notebook1 6 0
TuragaLab/PyGreentea
Language:Python1 3 42
TuragaLab/SplinePSF
Language:Cuda1 1 83
TuragaLab/stcnn
spatiotemporal convnet for modeling visual neuron responses
Language:HTML1 2 00
TuragaLab/greentea_training_template
Language:Python0 3 00
TuragaLab/gunpowder_examples
Example scripts for gunpowder training and prediction.
Language:Python0 13 00
TuragaLab/syntist_progress_report
Show progress and current results in syntist project
Language:Jupyter Notebook0 8 00
TuragaLab/system_setup
Scripts and docs describing system configuration.
Language:Makefile0 7 00
TuragaLab/connectome_reordering
Language:Jupyter Notebook
TuragaLab/DVIDSparkServices
Spark implemented EM reconstruction software workflows
Language:Python3 0
TuragaLab/dvision
Python client for the DVID database
Language:Python7 01
TuragaLab/flyem-dockerfiles
Docker Files for Fly EM Software
7 0
TuragaLab/flywire_reordering
TuragaLab/greentea-docker
Language:Shell12 01
TuragaLab/gunpowder
Data loading DAG for Greentea.
Language:Python13 02
TuragaLab/ipp-tools
Collection of IPyParallel tools and helper scripts
Language:Python7 01
TuragaLab/optoConn
Active causal connectivity inference
Language:Python4 01
TuragaLab/turagalab.github.io
2 0