TuragaLab/DECODE

Issues

• Package installation is broken in Ubuntu 20.24

  #237 opened 4 months ago by mmarinriera
  0

• Google Colab Notebook v0.10 may be outdated?

  #233 opened 9 months ago by Haydnspass
  0

• [Training | FIT] Circular Import of decode in the colab trainin example

  #222 opened a year ago by Hankeun-Lee
  1

• The bug of DeepSTORM3D post-processing mentioned in the paper's Supplementary section 1.

  #223 opened a year ago by yueyue0112
  1

• Install numba in DECODE environment?

  #217 opened a year ago by cleterrier
  5

• Gaussian PSF should be made faster and easier for 2D training

  #181 opened a year ago by Haydnspass
  0

• Setup Codespaces dev container for GitHub

  #196 opened a year ago by Haydnspass
  0

• Fresh install of DECODE 0.10.2

  #218 opened a year ago by cleterrier
  1

• WeightedErrors need updating

  #194 opened 2 years ago by Haydnspass
  0

• Add nightly releases

  #189 opened 2 years ago by Haydnspass
  0

• Python in Colab updated to 3.10 [Training | FIT] Failed training or fit.

  #215 opened 2 years ago by EndlessPush
  3

• Fitting.ipynb to fitting.py

  #216 opened 2 years ago by Ryan-Gh1
  3

• Training on Windows is slower with eight workers than with zero workers

  #210 opened 2 years ago by Nuka-Kola
  0

• Python 3.9 in Colab

  #212 opened 2 years ago by Haydnspass
  1

• Include docs in bump2version

  #205 opened 2 years ago by Haydnspass
  0

• Add note to docs regarding model / decode version

  #121 opened 2 years ago by Haydnspass
  0

• Memory Mapped Tensor for Tiff files

  #176 opened 2 years ago by Haydnspass
  0

• Spline breaks with certain image size

  #187 opened 2 years ago by Haydnspass
  1

• Evaluation is messy and out of date

  #195 opened 2 years ago by Haydnspass
  0

• Implement Inverse of Offset2Coordinate

  #199 opened 2 years ago by Haydnspass
  0

• v0.10.1 fails in dataloader_customs for num_workers = 0

  #208 opened 2 years ago by Haydnspass
  0

• TypeError: imread() got unexpected keyword arguments 'multifile'

  #177 opened 2 years ago by HypnosWei
  4

• scipy version 1.9.1 ValueError while training

  #178 opened 2 years ago by JohannaRahm
  6

• Can not use cuda?

  #202 opened 2 years ago by XH-B
  1

• Post-Processing slightly inconsistent for close high prob emitters

  #197 opened 2 years ago by Haydnspass
  0

• A problem about running DECODE in Google Colab

  #191 opened 2 years ago by Haydnspass
  2

• Deprecate python 3.6

  #185 opened 2 years ago by Haydnspass
  1

• Generalise ROI to Frame

  #182 opened 2 years ago by Haydnspass
  0

• Dummy issue

  #180 opened 2 years ago by Haydnspass
  0

• Calibration loader fails on newer calibration files

  #175 opened 2 years ago by Haydnspass
  0

• Think about docs for parameters

  #174 opened 2 years ago by Haydnspass
  0

• Remove nested lists in parameter file

  #173 opened 2 years ago by Haydnspass
  0

• Add Instructions for 2D fitting

  #171 opened 3 years ago by Haydnspass
  0

• Trouble Installing torch 1.7.1 on Colab

  #168 opened 3 years ago by frankfazekas
  3

• ValueError exception in loss function

  #149 opened 3 years ago by jcnossen
  1

• Loading the TIFF files

  #150 opened 3 years ago by AnshulToshniwal
  4

• Bead Calibration pixel Size

  #161 opened 3 years ago by pranayj77
  0

• Fitting Model: Allowable data types for input image (TIF vs TIFF)

  #138 opened 3 years ago by tsuijenk
  3

• PyTorch version with support for GPU

  #146 opened 3 years ago by tsuijenk
  1

• Running it on a CPU (since I don't have CUDA-enabled GPU)

  #139 opened 3 years ago by tsuijenk
  0

• Conda installs old decode version by default

  #137 opened 3 years ago by tsuijenk
  7

• Gridding artifact in the localization predictions

  #132 opened 3 years ago by tdaugird
  3

• Redirect terminal output elsewhere

  #131 opened 3 years ago by Haydnspass
  0

• Output folder ignores first parent

  #120 opened 3 years ago by Haydnspass
  1

• Failed to download assets

  #125 opened 3 years ago by github-actions
  0

• ImportError when trying to run Step 1: Install and Import DECODE

  #130 opened 3 years ago by bellsrockets
  5

• Make train / fit entrypoint

  #123 opened 4 years ago by Haydnspass
  1

• Add option to save model self-contained.

  #122 opened 4 years ago by Haydnspass
  0

• Errors while saving emitter as csv

  #117 opened 4 years ago by cleterrier
  5

• Add auto-restart to Colab

  #115 opened 4 years ago by Haydnspass
  1