smlm

There are 20 repositories under smlm topic.

  • jungmannlab/picasso

    A collection of tools for painting super-resolution images

    Language:Python1101612452

  • TuragaLab/DECODE

    This is the official implementation of our publication "Deep learning enables fast and dense single-molecule localization with high accuracy" (Nature Methods)

    Language:Python96713326

  • MSiemons/REALM

    Adaptive Optics plugin for MicroManager

    Language:Java11301

  • SRMLabHUST/LuckyProfiler

    An ImageJ plugin that uses the Projected-line FWHM resolution method to determine the image resolution of a final image.

    Language:Java7222

  • DominiqueBourgeois/SMIS

    Single Molecule Imaging Simulator with Advanced Fluorophore Photophysics

    Language:MATLAB6130

  • bencardoen/smlmvis

    Superresolution visualization of 3D protein localization data from a range of microscopes

    Language:Jupyter Notebook5200

  • Haydnspass/decode

    This is the original repo of the DECODE implementation (mirrored by github.com/TuragaLab/DECODE).

    Language:Python5321

  • hrheydarian/3D_SMLM_visualization

    Language:Matlab4201
  • IJLookUpSTORM

    CURTLab/IJLookUpSTORM

    ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables

    Language:C2100

  • ezrabru/POLCAM-SR

    Software to process single-molecule and diffraction-limited polarisation camera image data.

    Language:MATLAB2290

  • Jan-NM/LAND

    Localization Analyzer for Nanoscale Distributions (LAND) - 2D and 3D Analysis of SMLM Data

    Language:MATLAB2011

  • bencardoen/ERGO.jl

    Object / density detection in astigmatic superresolution dSTORM microscopy

    Language:Jupyter Notebook1200

  • dianamindroc/smlm

    Towards enhanced particle averaging for single-molecule localization microscopy using geometric deep learning

    Language:Jupyter Notebook10

  • HMels/Channel-Registration-SMLM

    Uses Catmull Rom Splines optimisation to align multiple channels in Single Molecule Localization Microscopy (or Super Resolution Microscopy). Done as part of the Thesis of Mels Habold at the Quantative Nanoscopy group of Delft University of Technology in 2022.

    Language:Python1100
  • smlmkalman

    andrew-buist/smlmkalman

    An R Package for the functions generate_filaments() and crescent_kf(), for use in SMLM (DNA-PAINT) image segmentation of filamentous structures, such as microtubules.

    Language:R0100

  • csoeller/PYME-extra

    extensions and plugin additions for python-microscopy (PYME)

    Language:Python0100

  • CURTLab/2CALM

    CALM (2-sample Comparative Analysis of 3D Localisation Microscopy data) is an analysis pipeline, which organizes localisation microscopy data into clusters of different dimensions and calculated the samples’ statistical parameters using various numerical methods.

    Language:MATLAB0100

  • imrahilias/biophysics

    All this is part of my Projektarbeit (student project) @ TU Wien 2021

    Language:Jupyter Notebook0100

  • KierranFalloon/SMLM-Scripts

    Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

    Language:Python0100

  • sfu-mial/smlmvis

    Superresolution visualization of 3D protein localization data from a range of microscopes . Mirror of https://github.com/bencardoen/smlmvis

    Language:Jupyter Notebook20