jungmannlab/picasso

Issues

• Linking of localizations does not work in v0.7.0

  #492 opened 4 months ago by CKSpahn
  3

• export as .csv for ThunderSTORM, The z (nm) column in the 3D data was incorrectly enlarged

  #494 opened 3 months ago by 15927335750
  1

• Picasso Localize parameters explanation

  #493 opened 4 months ago by AntKuzmenko
  0

• Inconsistent number of localisations in locs and spots files

  #266 opened 2 years ago by mb1069
  9

• Suggestion: Implement different AIM drift correction algorithm (or DME)

  #450 opened 6 months ago by ajasja
  6

• Issue with localize function

  #405 opened 6 months ago by Daan-Haas
  2

• localize via command-line + mle fitting: sx == sy

  #482 opened 6 months ago by MariusGlg
  2

• clusterfilter_DBSCANed file and centers file cannot be used

  #481 opened 6 months ago by SoohyenJang
  1

• Localization PSF width distribution has gaps

  #447 opened 6 months ago by loekloek
  9

• NSException in libc++abi When Running `picasso localize`

  #479 opened 7 months ago by inbasperu
  5

• Command line error - conflicting subparser

  #480 opened 6 months ago by mb1069
  3

• hdf2csv throws error that it is missing pytables

  #435 opened 7 months ago by lilbutsa
  3

• Concatenating/merging locs hdf5 files.

  #431 opened a year ago by ajasja
  6

• clusterfilter function of picassomodule

  #449 opened 9 months ago by SoohyenJang
  1

• z-position wrongly saved in csv files?

  #436 opened a year ago by MNFHensgens
  1

• Example notebook missing table name to read pandas dataframe

  #430 opened a year ago by ajasja
  1

• Add support for tiff file names

  #429 opened a year ago by ajasja
  2

• Issue with clustering functions output

  #428 opened a year ago by lilbutsa
  1

• Writing localisation tables with added Z column

  #406 opened a year ago by mb1069
  1

• Issue with yaml constructor using Picasso Join

  #392 opened a year ago by GolgiWhillikers
  3

• Query about Liquid Handling Steps(pipetting scheme) in Generated PDF

  #372 opened a year ago by imagicd86
  1

• Error while localizing spots with .ims files

  #344 opened a year ago by annafasoli
  3

• Error at Localize module launch after installing GPUFit on a pip install

  #343 opened a year ago by cleterrier
  2

• Errors with numpy version, then lack of PyQt5 when installing from source on Windows

  #342 opened a year ago by cleterrier
  1

• Wishlist: Filtering out adjacent localization

  #341 opened a year ago by IrrelevantNameTom
  1

• Pixel size as additional argument and batch export

  #334 opened 2 years ago by agvesga
  5

• KeyError: 'cpu_utilization'

  #332 opened 2 years ago by smurkel
  2

• Error when running 3d calibration routine

  #328 opened 2 years ago by mb1069
  2

• .Tif loading error

  #327 opened 2 years ago by CDGSU
  3

• Point Spread Function width value sx incoherent

  #326 opened 2 years ago by IrrelevantNameTom
  2

• [Solution found] Problem opening tif in Localize in new version

  #325 opened 2 years ago by iloyi
  0

• Wishlist: add set ROI parameters to cmd line Localize and GUI

  #316 opened 2 years ago by GolgiWhillikers
  1

• error in loading 3D calibration file v0.5.7

  #314 opened 2 years ago by ShaulliX
  2

• Wishlist: make pixelsize a positional argument in cmd line dbscan

  #315 opened 2 years ago by GolgiWhillikers
  1

• Failed installation in mac M1

  #308 opened 2 years ago by agvesga
  5

• Render Clustering DBSCAN - missing information in output files

  #306 opened 2 years ago by TanjaOtt
  2

• Cannot open .tiff files on M1 Mac

  #307 opened 2 years ago by aaliyari
  1

• error in dbscan cmd

  #305 opened 2 years ago by Z-Qing
  3

• Choosing a "Custom" colormap in the Render module can't be cancelled and makes the module unusable

  #298 opened 2 years ago by cleterrier
  1

• Error opening TIF file

  #295 opened 2 years ago by cleterrier
  3

• Where is the "picasso" folder when installing via conda ?

  #296 opened 2 years ago by cleterrier
  1

• Render Clustering files output no more '_dbscluster' information

  #294 opened 2 years ago by yunqingli62
  4

• Opening .tifs not acquired from uManager

  #271 opened 2 years ago by KDBuchan
  12

• Documentation for average3 module

  #288 opened 2 years ago by GolgiWhillikers
  1

• Wishlist/bug: Adding nd2 file detection to cmd localize

  #289 opened 2 years ago by GolgiWhillikers
  1

• Picasso localize crashes when using simulated raw files

  #275 opened 2 years ago by mb1069
  3

• QObject::setParent: Cannot set parent, new parent is in a different thread

  #270 opened 2 years ago by IrrelevantNameTom
  6

• Pip installation problems M1 macOS

  #258 opened 2 years ago by steinjohannes
  4

• Z axis unit

  #262 opened 2 years ago by ShaulliX
  0

• Installing HDBSCAN

  #246 opened 2 years ago by kaarjel
  0