Turku BioImaging
Turku BioImaging is a broad-based, interdisciplinary science and infrastructure umbrella that aims to unite bioimaging expertise in Finland.
Finland
Pinned Repositories
ColonyArea
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
Fast4DReg
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
filopodia-counter
Fiji script for automated filopodia counting from single cell images.
omero-cli-docker
omero-workshop
splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
splinedist-starter
Starter package for using SplineDist for cell segmentation
split-and-merge
Fiji macro that splits and merges multi-dimensional TIFFs.
stagetool-ui
Vue3 web interface for StageTool
turku-bioimaging.github.io
Website of Turku Bioimaging - Image Data Team (TBI-IDAT) containing our current and past projects as well as software and tools we use.
Turku BioImaging's Repositories
Turku-BioImaging/ColonyArea
ImageJ-plugin that performs standard analysis of colony formation assays conducted in 6- to 24-well dishes.
Turku-BioImaging/filopodia-counter
Fiji script for automated filopodia counting from single cell images.
Turku-BioImaging/splinedist-starter
Starter package for using SplineDist for cell segmentation
Turku-BioImaging/.github
Turku-BioImaging/Fast4DReg
Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
Turku-BioImaging/idt-colocalization-analysis
Container for performing classic image colocalization analysis
Turku-BioImaging/idt-texture-analysis
Turku-BioImaging/imagej.github.io
The ImageJ wiki
Turku-BioImaging/list-of-update-sites
The update sites ImageJ2 knows about automatically
Turku-BioImaging/mouse-brain-alignment-tool
Turku-BioImaging/omero-cli-docker
Turku-BioImaging/omero-docker
Deploy an OMERO server using Docker Compose
Turku-BioImaging/omero-workshop
Turku-BioImaging/splinedist
SplineDist: Automated Cell Segmentation with Spline Curves
Turku-BioImaging/split-and-merge
Fiji macro that splits and merges multi-dimensional TIFFs.
Turku-BioImaging/stagetool-ui
Vue3 web interface for StageTool
Turku-BioImaging/turku-bioimaging.github.io
Website of Turku Bioimaging - Image Data Team (TBI-IDAT) containing our current and past projects as well as software and tools we use.
Turku-BioImaging/nicolas-pasquier-crc-manuscript
Image processing source code for the paper "Signaling downstream of tumor-stroma interaction regulates mucinous colorectal carcinoma apicobasal polarity"