Tyrev

Tyrev's Stars

• braph-software/BRAPH

  Brain Analysis using Graph Theory

  Language:MATLAB122

• saezlab/cosmosR

  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

  Language:R5415

• guischu09/pymbn

  Language:Python2

• MEGA-GO/MegaGO

  Calculate semantic distance for sets of Gene Ontology terms

  Language:Python52

• YongLiuLab/BrainRadiomicsTools

  A radiomics tool with a variety of brain MRI processing functions, including affine registration, hippocampus segmentation and feature calculation.

  Language:Python229

• YongLiuLab/R2SN_construction

  Language:Python263

• DiseaseNeuroGenomics/dreamlet

  Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models

  Language:HTML9

• maulikkamdar/OntoApps-Stanford

  An umbrella platform for all my Biomedical Web applications

  Language:JavaScript2

• Tyrev/LSLODQuery

  Set of scripts to analyze the LSLOD Cloud

  1

• uc-bd2k/ilincsAPI

  Language:HTML92

• draskot/Vini

  The Vini in silico model of cancer

  Language:Python104

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k548

• rmarkello/abagen

  A toolbox for working with Allen Human Brain Atlas microarray expression data

  Language:Python8739

• linhuawang/MIST

  Language:Jupyter Notebook31

• genotyper/FunkyTax

  An R package for characterizing taxonomic and functional relationships among microbiome communities.

  Language:R1

• burdalab/TREA

  Transcriptional Regulator Enrichment Analysis

  Language:Jupyter Notebook11

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k891

• csoneson/alevinQC

  Create QC and summary reports for Alevin output

  Language:R296

• oganm/allenBrain

  :mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.

  Language:R154

• swaruplab/Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease

  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease

  Language:R7627