Pinned Repositories
ccp-nlp
A library of NLP related code
ccp-nlp-pipelines
A collection of NLP pipelines including pipelines that use the UIMA ConceptMapper to annotate text with concepts from the Open Biomedical Ontologies
CRAFT
craft-shared-tasks
This repository hosts evaluation scripts for evaluating annotations of various types against the CRAFT corpus.
crfpp
fork of https://code.google.com/p/crfpp/source/checkout
Ignorance-Question-Work
Epistemic/Questions corpus and classification information
kabob
KaBOB (Knowledge Base Of Biomedicine)
Knowtator-2.0
A text annotation plugin for Protege 5+
kr
Clojure API for RDF and SPARQL - provides consistent access to APIs including Jena and Sesame
obo-ci
Continuous integration for the Open Biomedical Ontologies
UC Denver Anschutz CCP's Repositories
UCDenver-ccp/CRAFT
UCDenver-ccp/Knowtator-2.0
A text annotation plugin for Protege 5+
UCDenver-ccp/ccp-nlp-pipelines
A collection of NLP pipelines including pipelines that use the UIMA ConceptMapper to annotate text with concepts from the Open Biomedical Ontologies
UCDenver-ccp/ccp-nlp
A library of NLP related code
UCDenver-ccp/Ignorance-Question-Work
Epistemic/Questions corpus and classification information
UCDenver-ccp/craft-shared-tasks
This repository hosts evaluation scripts for evaluating annotations of various types against the CRAFT corpus.
UCDenver-ccp/obo-ci
Continuous integration for the Open Biomedical Ontologies
UCDenver-ccp/datasource
A library of code for parsing (mostly biomedical) data source files and converting their contents to RDF
UCDenver-ccp/bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
UCDenver-ccp/common
a library of utility code for a variety of "common" tasks
UCDenver-ccp/Translator-TM-Provider-Pipelines
A collection of Apache Beam pipelines used for building and maintaining the TM Provider knowledge graph.
UCDenver-ccp/biorxiv-aws
AWS Lambda code for retrieving and extracting bioRxiv articles
UCDenver-ccp/brat-docker
containerised brat (http://brat.nlplab.org/)
UCDenver-ccp/Cartoomics
UCDenver-ccp/Concept-Recognition-as-Translation
UCDenver-ccp/DocumentMetadataAPI
UCDenver-ccp/file-conversion
Conversion utility for various NLP-related file types
UCDenver-ccp/Ignorance-Base
UCDenver-ccp/Ignorance-Question-Work-Full-Corpus
UCDenver-ccp/kgx-export
UCDenver-ccp/medline
Code related to processing the leased content of Medline provided by NLM
UCDenver-ccp/pmc-xml-to-txt-docker
Docker container for converting articles in the Pubmed Central XML format to plain text
UCDenver-ccp/text_mining_cooccurrence_kp
UCDenver-ccp/text_mining_targeted_association
UCDenver-ccp/translator-api-registry
This repo hosts the API metadata for the Translator project
UCDenver-ccp/translator-concept-recognition
A repository dedicated to training and evaluating concept recognition pipelines and components that are used by the Text Mining Provider for the NCATS Biomedical Translator Program.
UCDenver-ccp/translator-relation-extraction
This repository catalogs manually annotated sentences, code, and models used to mine relations between ontology concepts from text.
UCDenver-ccp/Translator-TM-Provider-Cooccurrence
UCDenver-ccp/Translator-TM-Provider-Evidence
UCDenver-ccp/Translator-TM-Provider-UI
UI for targeted assertion data