UCSC-Treehouse/pipelines
Makefiles to run dockerized pipelines used in Treehouse on a single sample
MakefileApache-2.0
Issues
- 0
- 1
How to handle failed fusion runs?
#38 opened by e-t-k - 0
- 0
Pipeline does not support single end
#36 opened by e-t-k - 0
Update fusion docker version
#32 opened by e-t-k - 0
pizzly crashes when run directly from Makefile
#34 opened by e-t-k - 1
- 0
Add a flag to run only fusion
#17 opened by e-t-k - 2
Add pizzly docker to process Kallisto fusion.txt
#29 opened by e-t-k - 0
prune counts.jf from jfkm output before download
#28 opened by e-t-k - 0
- 0
Add FLT3-ITD Pipeline
#25 opened by jpfeil - 1
Updates to treeshop.md documentation
#12 opened - 1
place derived bams in primary
#22 opened by e-t-k - 2
- 0
Makefile: should crash when finding N>2 fastq files
#21 opened by e-t-k - 4
Explore lite pipeline
#20 opened by rcurrie - 9
- 1
- 0
- 5
Support bam's as input to treeshop
#8 opened by rcurrie - 2
- 2