Pinned Repositories
brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
literature-search
Crawl and annotate pubmed articles with variants
dapp
Decentralized database of genomic and clinical data on the blockchain
ga4gh
kubernetes
Various snippets and tooling to use a kubernetes cluster
longink
Offline hacker news reader
pancan-gtex
Ingest, classify and explain pancan-gtex via keras and tensorflow
tumornormal
Classifying TCGA+TARGET+GTEX Gene Expression Data
variant2vec
pipelines
Makefiles to run dockerized pipelines used in Treehouse on a single sample
rcurrie's Repositories
rcurrie/pancan-gtex
Ingest, classify and explain pancan-gtex via keras and tensorflow
rcurrie/tumornormal
Classifying TCGA+TARGET+GTEX Gene Expression Data
rcurrie/kubernetes
Various snippets and tooling to use a kubernetes cluster
rcurrie/longink
Offline hacker news reader
rcurrie/variant2vec
rcurrie/ga4gh
rcurrie/jupyter
Tooling to run jupyter on a shared server and scale via k8s
rcurrie/bme230b
rcurrie/brca-exchange
Overall management and deployment of the BRCA Exchange web portal and pipeline scripts
rcurrie/caffe
Caffe: a Fast framework for neural networks
rcurrie/cgtd
Decentralized distributed database of genomic and clinical data.
rcurrie/curate-cgt
Curate CGT submission data into canonical formats
rcurrie/dtmp
Template Continious Integration Flask Project
rcurrie/gcn
Implementation of Graph Convolutional Networks in TensorFlow
rcurrie/hello-fhir
Sample FHIR files and code to open and explore
rcurrie/icgc-cgt
Scripts to ingest icgc public data and submit to a demo set of CGT servers
rcurrie/igene
I gene therefor i am
rcurrie/kluster
Experiments in kmer clustering
rcurrie/kubeflow
Various bits to spin up and interact with kubeflow
rcurrie/notebooks
Misc tooling for my personal jupyter sandbox
rcurrie/pubMunch
various tools to download, convert and process the full text of scientific articles
rcurrie/rcurrie.github.io
Software for the fun of it
rcurrie/search-jupyter
Search un-structured and semi-structured/tagged data in jupyter notebooks
rcurrie/tabula-muris
Ingest, classify and explain single cell RNA-Seq mouse data
rcurrie/triptox
HTML5 mobile application that calculates up to 3 routes and then shows sources of emissions on those routes based on an EPA database
rcurrie/wisdom
Snippets for Athena/Wisdom analysis tooling