/tumornormal

Classifying TCGA+TARGET+GTEX Gene Expression Data

Primary LanguageJupyter NotebookApache License 2.0Apache-2.0

DEPRECATED: See pancan-gtex

Classifying Gene Expression Data

Train several neural network based classifiers on the Toil TCGA, TARGET and GTEX expression datasets

To get started look at ingest.ipynb to wrangle the dataset and train.ipynb for a very simple fully connected neural net tumor/normal classifier.