Pinned Repositories
GEMSTAT
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
lncRNARN
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptomic data".
VarSAn
Enhancer-Activity-Predictor
STAP
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. http://www.ncbi.nlm.nih.gov/pubmed/19956545
GEMSTAT_refinement_sampler
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.
linuxbrew
A fork of Homebrew for Linux
Lab-Docker
Docker Containers used in the lab
gemstat-gl
SERGIO
UIUCSinhaLab's Repositories
UIUCSinhaLab/lncRNARN
Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptomic data".
UIUCSinhaLab/VarSAn
UIUCSinhaLab/GEMSTAT
Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
UIUCSinhaLab/Stubb
UIUCSinhaLab/phyme
UIUCSinhaLab/cisMetalysis
UIUCSinhaLab/crmfinding
UIUCSinhaLab/d2z
UIUCSinhaLab/dips
UIUCSinhaLab/EvolSimul
UIUCSinhaLab/gemstat-gl
UIUCSinhaLab/indelign
UIUCSinhaLab/SCRMshaw
UIUCSinhaLab/stemma
UIUCSinhaLab/swan
UIUCSinhaLab/GEMSTAT_scripts
Various task-agnostic scripting language tools for dealing with GEMSTAT.
UIUCSinhaLab/GEMSTAT_refinement_sampler
A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.
UIUCSinhaLab/SERGIO
UIUCSinhaLab/Enhancer-Activity-Predictor
UIUCSinhaLab/MOP
UIUCSinhaLab/Lab-Docker
Docker Containers used in the lab
UIUCSinhaLab/autotools-unittest
The autotools-unittest is a minimal starter kit when writing C++ library with autotools, google test and google mock.
UIUCSinhaLab/SNOT_lang
Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.
UIUCSinhaLab/ASTER
Analysis of SNPs Targeting Evolutionary Rates
UIUCSinhaLab/STAP
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. http://www.ncbi.nlm.nih.gov/pubmed/19956545
UIUCSinhaLab/CPPExperiments
A cannonical place to store C++ example code / experiments that will allow us to pin down certain behaviours. Then we can approach our other projects with confidence.
UIUCSinhaLab/linuxbrew
A fork of Homebrew for Linux
UIUCSinhaLab/SinhaLab_Infrastructure
Workaround because we have an ancient Linux distribution